DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Loxl1 and loxl3b

DIOPT Version :10

Sequence 1:NP_524607.1 Gene:Loxl1 / 43712 FlyBaseID:FBgn0039848 Length:360 Species:Drosophila melanogaster
Sequence 2:XP_073775462.1 Gene:loxl3b / 336266 ZFINID:ZDB-GENE-030131-8210 Length:863 Species:Danio rerio


Alignment Length:343 Identity:138/343 - (40%)
Similarity:186/343 - (54%) Gaps:32/343 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 LSQGWANLNVQNNYRNMMVRLATNKAALAGIQVLREGRVEVSFDFGASWGTICSTSWSMREANVV 79
            |..|:||..:|       |||:..::..       ||||||.  .|..||::||..||.:||.|:
Zfish   521 LGLGYANHGLQ-------VRLSGGRSPY-------EGRVEVR--VGQRWGSVCSEGWSTKEAMVL 569

  Fly    80 CRQLGLGYASKASQGTEHGDSRKY-PWGMVGTLCRGTERRLADCIRESHYPNLCNARNHNVSIAA 143
            |||||||::..|...|.:.||... ...|.|..|.|.|..::.|   .|:..: |.:......||
Zfish   570 CRQLGLGFSMHAITETWYWDSSNVTDMVMSGVKCTGDEMSISQC---QHHRTV-NCQKAAARFAA 630

  Fly   144 ---CVSHSADLEIGLVDIERTARLEAVPMSRLTCAMEEHCVSADAYEIRRTNPHAARILLRFSVK 205
               |...::||.:....:::|..:|..|:..|.||.||.|:|..|.....  |:..|.|||||.:
Zfish   631 GVICSETASDLVLNAPLVQQTTYIEDRPLHMLYCAAEEDCLSKSAASANW--PYGHRRLLRFSSQ 693

  Fly   206 ASNVGTADVSPYANYKEWVWHQCHRHYHSMNVFATFDVYDLNYRKVAQGHKASFCLMDSECRPGV 270
            ..|:|.||..|.|....||||.||.|||||::|..:|:...|..|||:||||||||.|::|..||
Zfish   694 IHNIGRADFRPKAGRHSWVWHACHGHYHSMDIFTHYDLMSANGTKVAEGHKASFCLEDTDCDEGV 758

  Fly   271 RQKYTCGN-TTQGISVGCADTYTDVLDCQWVDVTRV-PINRRYILRVALNPEYKLGEISFENNGA 333
            .::|.|.| ..|||:|||.|.|...:||||:|:|.| |.|  |||:|.:||.|::.|..|.||..
Zfish   759 SKRYKCANFGEQGITVGCWDLYRHDIDCQWIDITDVKPGN--YILQVVINPNYEVSESDFTNNAM 821

  Fly   334 ECLLDYTGVRQTTRIFNC 351
            :|...|.|.|  ..:.||
Zfish   822 KCNCKYDGHR--IWVHNC 837

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Loxl1NP_524607.1 SR 50..136 CDD:214555 35/86 (41%)
Lysyl_oxidase 149..351 CDD:460102 90/203 (44%)
loxl3bXP_073775462.1 None

Return to query results.
Submit another query.