DRSC/TRiP Functional Genomics Resources

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Protein Alignment Loxl1 and Ssc4d

DIOPT Version :10

Sequence 1:NP_524607.1 Gene:Loxl1 / 43712 FlyBaseID:FBgn0039848 Length:360 Species:Drosophila melanogaster
Sequence 2:NP_001418649.1 Gene:Ssc4d / 304401 RGDID:1306970 Length:586 Species:Rattus norvegicus


Alignment Length:172 Identity:54/172 - (31%)
Similarity:72/172 - (41%) Gaps:35/172 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 GRVEVSFDFGASWGTICSTSWSMREANVVCRQLGLGYASKASQGTEHGDSRKYPWGMVGTLCRGT 115
            |||||.:..|  |||:|...|...:|.|.||:.|.|.|..|: |..|....:.|..:....|.||
  Rat   366 GRVEVLYAGG--WGTVCDDDWDFADARVACREAGCGPALGAT-GLGHFGYGRGPVLLDNVGCTGT 427

  Fly   116 ERRLADCIRESHYPNLCNARNHNVSIAACVSHSADLEIGL---VDIERTARLEAVPMSR---LTC 174
            |.||:||.......:.|.  :|..:.|.|....   |:||   .|...|.|:.: |..|   |..
  Rat   428 EARLSDCFHLGWGQHNCG--HHEDAGALCAGPE---ELGLQVQQDGSETTRMPS-PRPRDGHLRL 486

  Fly   175 AMEEH-C--------------VSADAYEIRRTNPHAARILLR 201
            |...| |              |..||:::|     ||.:|.|
  Rat   487 ASGTHRCEGRVELFLGQQWGTVCDDAWDLR-----AAIVLCR 523

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Loxl1NP_524607.1 SR 50..136 CDD:214555 31/84 (37%)
Lysyl_oxidase 149..351 CDD:460102 20/74 (27%)
Ssc4dNP_001418649.1 SR 69..168 CDD:214555
SR 200..299 CDD:214555
SR 355..454 CDD:214555 33/92 (36%)
SR 484..584 CDD:214555 12/45 (27%)
Blue background indicates that the domain is not in the aligned region.

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