DRSC/TRiP Functional Genomics Resources

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Protein Alignment Loxl1 and Ssc4d

DIOPT Version :10

Sequence 1:NP_524607.1 Gene:Loxl1 / 43712 FlyBaseID:FBgn0039848 Length:360 Species:Drosophila melanogaster
Sequence 2:XP_006504398.1 Gene:Ssc4d / 109267 MGIID:1924709 Length:592 Species:Mus musculus


Alignment Length:171 Identity:51/171 - (29%)
Similarity:70/171 - (40%) Gaps:33/171 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 GRVEVSFDFGASWGTICSTSWSMREANVVCRQLGLGYASKASQGTEHGDSRKYPWGMVGTLCRGT 115
            |||||.:..|  |||:|...|...:|.|.||:.|.|.|..|: |..|....:.|..:....|.||
Mouse   372 GRVEVLYAGG--WGTVCDDDWDFADARVACREAGCGPALGAT-GLGHFGYGRGPVLLDNVGCTGT 433

  Fly   116 ERRLADCIRESHYPNLCNARNHNVSIAACVSHSADLEIGLVDIERTARLEAVPMSR-----LTCA 175
            |.||:||.......:.|.  :|..:.|.|....   |:||...:..:....:|..|     |..|
Mouse   434 EARLSDCFHLGWGQHNCG--HHEDAGALCAGPE---ELGLQVQQAGSETTRMPSPRPRDGHLRLA 493

  Fly   176 MEEH-C--------------VSADAYEIRRTNPHAARILLR 201
            ...| |              |..||:::|     ||.:|.|
Mouse   494 SGTHRCEGRVELFLGQRWGTVCDDAWDLR-----AAIVLCR 529

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Loxl1NP_524607.1 SR 50..136 CDD:214555 31/84 (37%)
Lysyl_oxidase 149..351 CDD:460102 17/73 (23%)
Ssc4dXP_006504398.1 SR 69..168 CDD:214555
SR 200..299 CDD:214555
SR 361..460 CDD:214555 33/92 (36%)
SR 490..590 CDD:214555 12/45 (27%)
Blue background indicates that the domain is not in the aligned region.

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