DRSC/TRiP Functional Genomics Resources

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Protein Alignment Loxl1 and msr1

DIOPT Version :10

Sequence 1:NP_524607.1 Gene:Loxl1 / 43712 FlyBaseID:FBgn0039848 Length:360 Species:Drosophila melanogaster
Sequence 2:XP_012811122.2 Gene:msr1 / 100494467 XenbaseID:XB-GENE-486147 Length:417 Species:Xenopus tropicalis


Alignment Length:115 Identity:32/115 - (27%)
Similarity:49/115 - (42%) Gaps:12/115 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 MVRLATNKAALAGIQVLREGRVEVSFDFGASWGTICSTSWSMREANVVCRQLGLGYASKASQGTE 96
            :|||....::|.       ||||| |..| .|||:|...|.:.:..|||:.||....::......
 Frog   315 LVRLVGGSSSLL-------GRVEV-FHNG-EWGTVCDDHWGLEDGKVVCKMLGYTGVAQVYVNAY 370

  Fly    97 HGDSRKYPWGMVGTLCRGTERRLADCIRESHYPNLCNARNHNVSIAACVS 146
            .|......| |....|.|.|:.:.:|..:..  .:.|.|:...:...||:
 Frog   371 FGQGLARIW-MDDVQCNGIEKSIFECKFKGW--GITNCRHTEDAGVRCVA 417

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Loxl1NP_524607.1 SR 50..136 CDD:214555 25/85 (29%)
Lysyl_oxidase 149..351 CDD:460102
msr1XP_012811122.2 ClyA-like <62..181 CDD:459244
gly_rich_SclB 144..>302 CDD:468478
Collagen 239..291 CDD:460189
SR 316..415 CDD:214555 30/110 (27%)
Blue background indicates that the domain is not in the aligned region.

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