DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment chp and Tril

DIOPT Version :10

Sequence 1:NP_001263137.1 Gene:chp / 43690 FlyBaseID:FBgn0267435 Length:1338 Species:Drosophila melanogaster
Sequence 2:NP_080093.1 Gene:Tril / 66873 MGIID:1914123 Length:809 Species:Mus musculus


Alignment Length:518 Identity:130/518 - (25%)
Similarity:194/518 - (37%) Gaps:133/518 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   512 SALPAEPLRHLTSLQELDFSNNHISSMSDTSFHFLKNLRLLELHDNRIEQVLKGTFQGDIHSKLE 576
            |:||: |...||    .....|.|::::...||.|..||.|:|..|:|..:...||:.  .|:||
Mouse    53 SSLPS-PQDVLT----YSLGGNFITNITAFDFHRLGQLRRLDLQYNQIRSLHPKTFEK--LSRLE 110

  Fly   577 EISLRFNHLTSISQHTFFDLEALRKLHLDDNKIDKIERRAFMNLDELEYLSLRGNKINNLADESF 641
            |:.|..|.|.::...|...|..||.|:.:.|:|.::.|.:|..|:.|..|.|.||.:..|.|..|
Mouse   111 ELYLGNNLLQALVPGTLAPLRKLRILYANGNEIGRLSRGSFEGLESLVKLRLDGNVLGALPDAVF 175

  Fly   642 QNLPKLEILDMAFNQLPNFNFDYFDQVGTLSNLNVNVSHNQIRQLMYNSSWSGRNEHGGMYHSNI 706
            ..|..|..|.:..|::.....:.|.|:|.|..|  |:|.|:::.                     
Mouse   176 APLGNLLYLHLESNRIRFLGKNAFSQLGKLRFL--NLSANELQP--------------------- 217

  Fly   707 KILDLSHNNISIIHPGYFRPAEISLTHLHLGYNSLMNTTRDVFGNMPHLQWLDLSYNWIHELDFD 771
                      |:.|...|.|.. ||:.|.|..|||.:....||.::|.|..|.||.|.:..|..:
Mouse   218 ----------SLRHAATFVPLR-SLSTLILSANSLQHLGPRVFQHLPRLGLLSLSGNQLTHLAPE 271

  Fly   772 AFKNTKQLQLVFFGHNYLSDIPQDIFKPVQGLRIVDFSHNHLRGLPDNLFYNGGMEKLDVSHNMM 836
            ||...:.|:.:....|.|:.:|..:.:|:..|..:|                             
Mouse   272 AFWGLEALRELRLEGNRLNQLPLTLLEPLHSLEALD----------------------------- 307

  Fly   837 LKIPSSSLSSLAALTLCELHLSNNFISTIHSMDLSNKFRSLRYLDISYNYLLRIDDAVFATMPKL 901
                                ||.|.:|.:|.....::.| ||.|.:..|.|..:...:||..|.|
Mouse   308 --------------------LSGNELSALHPATFGHQGR-LRELSLRDNALSALSGDIFAASPAL 351

  Fly   902 AVLDLSHN--------RDLKVMDKSFMGLENSLIKLGLENISLSTVPEIRLKYLREFRLGYNELP 958
            ..|||..|        |.|    |.:||..:|..:|....:.....|.:|.||          |.
Mouse   352 YRLDLDGNGWTCDCRLRGL----KRWMGNWHSQGRLLTVFVQCRHPPALRGKY----------LD 402

  Fly   959 SIPQELAHNMS----------NLRMLDL---SNNDLT-------NVPLMTQALPHLRRLMLSG 1001
            .:..:|..|.|          ..|...|   |...:|       .:||..|..|..|..:|.|
Mouse   403 YLDDQLLQNGSCVDPSPSPTAGSRQWPLPTSSEEGMTPPAGLSQELPLQPQPQPQQRGRLLPG 465

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
chpNP_001263137.1 LRR <84..320 CDD:443914
leucine-rich repeat 84..103 CDD:275380
leucine-rich repeat 104..128 CDD:275380
leucine-rich repeat 129..152 CDD:275380
leucine-rich repeat 153..177 CDD:275380
leucine-rich repeat 178..201 CDD:275380
leucine-rich repeat 202..226 CDD:275380
leucine-rich repeat 227..250 CDD:275380
leucine-rich repeat 251..279 CDD:275380
leucine-rich repeat 280..326 CDD:275380
leucine-rich repeat 327..348 CDD:275380
leucine-rich repeat 352..375 CDD:275380
PPP1R42 355..564 CDD:455733 17/51 (33%)
leucine-rich repeat 376..401 CDD:275380
leucine-rich repeat 426..450 CDD:275378
leucine-rich repeat 451..474 CDD:275380
LRR_8 473..559 CDD:404697 16/46 (35%)
leucine-rich repeat 475..524 CDD:275380 5/11 (45%)
leucine-rich repeat 500..519 CDD:275380 3/6 (50%)
leucine-rich repeat 525..548 CDD:275380 5/22 (23%)
LRR <540..>834 CDD:443914 77/293 (26%)
leucine-rich repeat 549..574 CDD:275380 8/24 (33%)
leucine-rich repeat 575..598 CDD:275380 8/22 (36%)
leucine-rich repeat 599..622 CDD:275380 8/22 (36%)
leucine-rich repeat 623..646 CDD:275380 9/22 (41%)
leucine-rich repeat 647..730 CDD:275380 15/82 (18%)
leucine-rich repeat 648..673 CDD:275380 6/24 (25%)
leucine-rich repeat 674..705 CDD:275380 4/30 (13%)
LRR <730..1081 CDD:443914 70/300 (23%)
leucine-rich repeat 731..754 CDD:275380 8/22 (36%)
leucine-rich repeat 755..778 CDD:275380 8/22 (36%)
leucine-rich repeat 779..802 CDD:275380 5/22 (23%)
leucine-rich repeat 803..823 CDD:275380 2/19 (11%)
leucine-rich repeat 852..876 CDD:275380 5/23 (22%)
leucine-rich repeat 877..900 CDD:275380 7/22 (32%)
leucine-rich repeat 901..925 CDD:275380 10/31 (32%)
leucine-rich repeat 926..946 CDD:275380 3/19 (16%)
leucine-rich repeat 947..970 CDD:275380 4/32 (13%)
leucine-rich repeat 971..993 CDD:275380 7/31 (23%)
leucine-rich repeat 994..1014 CDD:275380 3/8 (38%)
leucine-rich repeat 1019..1042 CDD:275380
TrilNP_080093.1 LRRNT 27..56 CDD:214470 1/2 (50%)
leucine-rich repeat 37..57 CDD:275378 2/3 (67%)
LRR 1 61..81 5/23 (22%)
LRR_8 65..119 CDD:404697 19/55 (35%)
LRR 2 84..105 8/20 (40%)
leucine-rich repeat 85..108 CDD:275380 8/24 (33%)
LRR 104..>359 CDD:443914 84/340 (25%)
LRR 3 108..129 7/20 (35%)
leucine-rich repeat 109..132 CDD:275380 8/22 (36%)
LRR 4 132..153 7/20 (35%)
leucine-rich repeat 133..156 CDD:275380 8/22 (36%)
LRR 5 156..177 8/20 (40%)
leucine-rich repeat 157..180 CDD:275380 9/22 (41%)
LRR 6 180..201 4/20 (20%)
leucine-rich repeat 181..204 CDD:275380 5/22 (23%)
LRR 7 204..223 7/51 (14%)
leucine-rich repeat 205..230 CDD:275380 9/58 (16%)
LRR 8 230..251 9/20 (45%)
leucine-rich repeat 231..254 CDD:275380 8/22 (36%)
LRR 9 254..275 8/20 (40%)
leucine-rich repeat 255..278 CDD:275380 8/22 (36%)
LRR 10 278..298 4/19 (21%)
leucine-rich repeat 279..302 CDD:275380 5/22 (23%)
LRR 11 302..323 7/69 (10%)
leucine-rich repeat 303..323 CDD:275380 7/68 (10%)
LRR 12 326..347 7/21 (33%)
leucine-rich repeat 327..350 CDD:275380 7/22 (32%)
PCC 332..>441 CDD:188093 29/122 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 412..462 10/49 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 483..563
FN3 587..665 CDD:473895
Blue background indicates that the domain is not in the aligned region.

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