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Protein Alignment chp and caps

DIOPT Version :10

Sequence 1:	NP_001263137.1	Gene:	chp / 43690	FlyBaseID:	FBgn0267435	Length:	1338	Species:	Drosophila melanogaster
Sequence 2:	NP_001303391.1	Gene:	caps / 39493	FlyBaseID:	FBgn0023095	Length:	811	Species:	Drosophila melanogaster

Alignment Length:	807	Identity:	167/807 - (20%)
Similarity:	272/807 - (33%)	Gaps:	275/807 - (34%)

- Green bases have known domain annotations that are detailed below.

  Fly   518 PLRHLTSLQELDFSNNHISSMSDTSFHFLKNLRLLELHDNRIEQVLKGTFQGDIHSKLEEISLRF 582
            |:....::|.|...||.:.:: |:|..|...|..|:                          |.|
  Fly    67 PIALNPAIQRLVIKNNKLKTI-DSSMQFYAQLTFLD--------------------------LSF 104

  Fly   583 NHLTSISQHTFFDLEALRKLHLDDNKIDKIERRAFMNLDELEYLSLRGNKINNLADESFQNLPKL 647
            |.:.:|.:.:|.....|::||||.|||.::..:.|:.|..:..|:||||.|..|...:|..:.||
  Fly   105 NDMLTIPERSFAYHAKLQELHLDHNKIGQVSNKTFLGLSTISVLNLRGNLIAELEYRTFSPMVKL 169

  Fly   648 EILDMAFNQLPNFNFDYFDQVGTLSNLNVNVSHNQIRQLMYNSSWSGRNEHGGMYHSNIKILDLS 712
            ..|::..|::.:.:....|.:                                   .|:::|.|.
  Fly   170 AELNLGQNRISHIDPHALDGL-----------------------------------DNLRVLYLD 199

  Fly   713 HNNISIIHPGYFRPAEI------SLTHLHLGYNSLMNTTRDVFGNMPHLQWLDLSYNWIHELDFD 771
            .|.::.:      |.|:      ||..|:||.||.|......|.::..|..|||....:|.:..|
  Fly   200 DNTLTTV------PGELTFQALHSLAELYLGTNSFMTIPGGAFQDLKGLTRLDLRGAGLHNISGD 258

  Fly   772 AFKNTKQLQLVFFGHNYLSDIPQDIFKPVQGLRIVDFSHNHLRGLPDNLFYN-GGMEKLDVSHNM 835
            |.|.                        :..||.:|.|.|.|..:|...|.. |.:|:|::..|.
  Fly   259 ALKG------------------------LVSLRFLDLSDNRLPAIPTAAFQRLGRLEQLNIGQND 299

  Fly   836 MLKIPSSSLSSLAALTLCELHLSNNFISTIHSMDLSNKFRSLRYLDIS-YNYLLRIDDAVFATMP 899
            ...|.|.:.|.|                           |.||:|::: ...|.|::...|:...
  Fly   300 FEVISSGAFSGL---------------------------RELRHLELTGAQRLRRVESGAFSGNT 337

  Fly   900 KLAVLDLSHNRDLKVMDKSFMGLENSLIKLGLENISLSTVPEIRLKYLREFRLGYNELPSIPQEL 964
            .|..|:||.|:.|.                .|.:|:|..:|.:....|:.     |:|.|:.:.|
  Fly   338 NLEHLNLSSNKQLN----------------ELSSIALGGLPHLSTVVLKA-----NQLSSLDEGL 381

  Fly   965 AHNMSNLRMLDLSNNDLTNVPLMTQA-LPHLRRLMLSGN------PITSLNNNSFDGVNEDLEML 1022
            . ..::|:.||||.|     |..... |..||.|::|.|      |:..    ::.....||.:.
  Fly   382 V-PWADLQTLDLSEN-----PFECDCRLLWLRHLLVSRNASGQYAPVIC----AYPTALRDLPLA 436

  Fly  1023 DISNFRLHYFEYGCLDSLPH---------------LRSLKLTAYSHLEHFNIPHLLRHH------ 1066
            .::...|     ||......               :.:|.|..|: ..| .|..:|:.|
  Fly   437 HLAEPLL-----GCAHGAASKQAIIGILVVACAALITTLALVLYT-CRH-RIREMLKGHSALGRK 494

  Fly  1067 ---YN-------------------------------------IRQLWIEAPQPFTRIVKKGSG-- 1089
               |.                                     :.:|.:|||.| .::..:|.|
  Fly   495 EREYQKTFSDEEYMSRPPPGGGGVHPAAGGYPYIAGNSRMIPVTELXLEAPPP-PQLRGRGGGGG 558

  Fly  1090 ---PTQEMQTLQLGNPTDLQREMEGHLPSKLTNITFSGPQFTNLNERILRGMRSPYLYMQLF--- 1148
               .:..:|.||:.:..|........| |.:..:|.:|.|.....::....|......|:|.
  Fly   559 ASTASGAVQQLQVPSAVDQASNSFAQL-SHIHYMTNNGQQQQAQQQQSTSKMHHSQQDMRLLACN 622

  Fly  1149 ------NTSL-QALPP-----NFFKYMGRVRN-ISLDIRYHNRNLKKIPNPNTGAV--------- 1191
                  .||| :..||     ....|...:.| |.|...:.|.|..:..|.:.|.|
  Fly   623 GGKPLNATSLPRHRPPVVQESTLSHYSQPLANGIRLTQDHFNHNQNQSHNQHYGGVYAKPCDAMS 687

  Fly  1192 --PYLPNSVFLTDLKMSHTDLNCDCDL 1216
              .|:.|:        ||..|..|.||
  Fly   688 EPGYIHNN--------SHYSLPLDHDL 706

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.