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Protein Alignment chp and trn

DIOPT Version :10

Sequence 1:	NP_001263137.1	Gene:	chp / 43690	FlyBaseID:	FBgn0267435	Length:	1338	Species:	Drosophila melanogaster
Sequence 2:	NP_001261796.1	Gene:	trn / 39491	FlyBaseID:	FBgn0010452	Length:	751	Species:	Drosophila melanogaster

Alignment Length:	662	Identity:	139/662 - (20%)
Similarity:	231/662 - (34%)	Gaps:	206/662 - (31%)

- Green bases have known domain annotations that are detailed below.

  Fly   518 PLRHLTSLQELDFSNNHISSMSDTSFHFLKNLRLLELHDNRIEQVLKGTFQGDIHSKLEEISLRF 582
            |:....|:|.|...:|.|.:: |:|..|...|..|:|..
  Fly    54 PIALNPSIQRLVIKSNKIKTI-DSSIQFYAELTFLDLSS-------------------------- 91

  Fly   583 NHLTSISQHTFFDLEALRKLHLDDNKIDKIERRAFMNLDELEYLSLRGNKINNLADESFQNLPKL 647
            |||.:|.|.||...:.|:::||:.|||.:|..:.|:.|..:..|:||||:|:.|...:|..|.|:
  Fly    92 NHLMTIPQRTFAYQKKLQEVHLNHNKIGQISNKTFIGLSAVTVLNLRGNQISELHQGTFTPLLKI 156

  Fly   648 EILDMAFNQLPNFNFDYFDQVGTLSNLNVNVSHNQIRQLMYNSSWSGRNEHGGMYHSNIKILDLS 712
            |.|::..|::...:...||.:                                   |.::||.|.
  Fly   157 EELNLGENRIGYLDPKAFDGL-----------------------------------SQLRILYLD 186

  Fly   713 HNNISIIHPGYFRPAEISLTHLHLGYNSLMNTTRDVFGNMPHLQWLDLSYNWIHELDFDAFKNTK 777
            .|.::.:.......|..||..|.||.|:|.:...|.|.::..|..|:|....:..:..|:|...:
  Fly   187 DNALTTVPDPVIFQAMPSLAELFLGMNTLQSIQADAFQDLKGLTRLELKGASLRNISHDSFLGLQ 251

  Fly   778 QLQLVFFGHNYLSDIPQDIFKPVQGLRIVDFSHNHLRGLPDNLFY-------------------- 822
            :|:::....|.|..||......:..|..:....|....:.:..|.
  Fly   252 ELRILDLSDNRLDRIPSVGLSKLVRLEQLSLGQNDFEVISEGAFMGLKQLKRLEVNGALRLKRVM 316

  Fly   823 ------NGGMEKLDVSHN-MMLKIPSSSLSSLAALTLCELHLSNNFISTIHSMDLSNKFRSLRYL 880
                  ||.:|.|::|.| |:|::...:||.|:                           .|:::
  Fly   317 TGAFSDNGNLEYLNLSSNKMLLEVQEGALSGLS---------------------------QLKHV 354

  Fly   881 DISYNYLLRIDDAVFATMPKLAVLDLSHNR---DLKVMDKSFMGLENSLIKLGLENISLSTVPEI 942
            .:..|.|..:.:.:| ....|..||||.|.   |.:|     |.|.|.|:   .:|.|...|.|:
  Fly   355 VLKANALTSLAEGLF-PWKDLQTLDLSENPLSCDCRV-----MWLHNLLV---AKNASQDDVSEL 410

  Fly   943 RLKYLREFRLGYNELPSIPQELAHNMSNLRMLDLSNND-----------------LTNVPLMTQA 990
            ..::....|         .:.|.|  .|..|:..::.|                 :|.:.|:...
  Fly   411 LCEFPERLR---------GESLRH--LNPAMMGCTHADPRKQALIGALLVGSAATITALALVLYR 464

  Fly   991 LPHLRRLMLSGNPITSLNNNSFDG----------VNEDLEMLDISNFRLHYFEYGCLDSLPHLRS 1045
            ..|..|..:.|    .|..||..|          .:||.    :|..:.|....|...:.|:.
  Fly   465 CRHKIRETIKG----GLWGNSALGRKEREYQKTFCDEDY----MSRHQHHPCSLGIHSTFPNT-- 519

  Fly  1046 LKLTAYSHLEHFNIPHL--LRHHYNIRQLWIEAPQPFTRIVKKGS-GPTQEMQTLQLGNPTDLQR 1107
                       :..||.  ..|||.:      .|.|...:   |: .|.|:.|.|.:...|.:..
  Fly   520 -----------YTAPHHPGATHHYGM------CPMPVNDL---GAIDPQQKFQQLVVPTATMISE 564

  Fly  1108 EMEGHLPSKLTN 1119
            :       ||.|
  Fly   565 K-------KLNN 569

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.