DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment chp and ltl

DIOPT Version :10

Sequence 1:NP_001263137.1 Gene:chp / 43690 FlyBaseID:FBgn0267435 Length:1338 Species:Drosophila melanogaster
Sequence 2:NP_729265.1 Gene:ltl / 38845 FlyBaseID:FBgn0268063 Length:817 Species:Drosophila melanogaster


Alignment Length:664 Identity:152/664 - (22%)
Similarity:234/664 - (35%) Gaps:223/664 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 PCT-------YNVMCTCSKSSTDLGIVHCKNVPFPALPRMVNQSKVFMLHMENTGLREIE--PYF 98
            |||       .:|..:|.|       :...|....:|...:|......|.:.::.|.::|  .:.
  Fly    24 PCTCETGKAWNHVELSCEK-------LESFNAVVDSLANKLNADTNIDLKITHSQLDDLEMRSFT 81

  Fly    99 LQSTGMYRLKISGNHLTEIPDDAFTGLERSLWELILPQNDLVEIPSKSLRHLQKLRHLDLGYNHI 163
            ..:..:|:|::..|.|..:|:..|.||....: |.:..|||.|||..:|.|:..|..||:|...|
  Fly    82 DMNFNLYKLRMQWNSLKSLPEVPFRGLSNVTY-LSIGDNDLDEIPKHALSHMPSLLTLDIGRCKI 145

  Fly   164 THIQHDSFRGLEDSLQTLILRENCISQLMSHSF-SGLLI--------------------LETLDL 207
            ..:|.:.|||:: .:..|||..|.|::|...|| ..|||                    ||:|.:
  Fly   146 RAVQQEDFRGIQ-RVTNLILVSNIITRLDRGSFPKSLLILHLGRNQLESLNGSLHDLHNLESLFI 209

  Fly   208 SGNNLFEIDPNVFVDGMPRLTRLLLTDNILSEIPYDALGPLKSLRTLDISHNVIWSLSGNETYEI 272
            :.||:..:|..:...|..||  |:..:|.|..:|                               
  Fly   210 NANNITSLDDELPDGGQLRL--LMAHNNRLERLP------------------------------- 241

  Fly   273 KASTKLNLDNLH-LEYNHIEVLPPNSFKYFDTVNRTFFDGNPIHTLREDAFKPARIREIYMRYCG 336
                 .|:..:| ||..||..   |..:.||.|.|                             .
  Fly   242 -----ANMAGMHSLETVHIHC---NQLRSFDRVLR-----------------------------N 269

  Fly   337 LTNISPVAFDSLVNSLQILDLSGNNLTKLHHKLFNNFDVLRVISMRDNKIKIQKPTETFNAVHYT 401
            ..|:|.|..|:            |.|..|....|.:...:..:.|..|.|               
  Fly   270 AVNLSEVMADN------------NELEYLAQDEFASCSKVETLQMGCNHI--------------- 307

  Fly   402 LLKLDLSGDRNDPTNLQTLRKMRNMRSLSISRLGSSSVGPEDFKDFGVELEDLQITRASLSGIQS 466
                                |..|...|.|.:|.:::....|.::|.:         |.|.|:  
  Fly   308 --------------------KSLNSSLLPILKLKNANFSFNDIEEFSM---------AELHGL-- 341

  Fly   467 HAFKHVRGLKRLDFSENGISSIENDAFHEIGHSLISLKMSHGYSGSALPAEP--LRHLTSLQELD 529
                  |.||.|..|.|.|..:                         || :|  ::.| .|..||
  Fly   342 ------RSLKTLQLSSNRIQRL-------------------------LP-DPRGVQEL-MLVNLD 373

  Fly   530 FSNNHISSMSDTSFHFLKNLRLLELHDNRIEQVLKGTFQGDIHSKLEEISLRFNHLTSISQHTFF 594
            ..||.|.|::. :...|.|||:|.|..||:|.:..|.|.|.|  :|:.:.|..|.|..:......
  Fly   374 LDNNRIDSLNG-ALAGLGNLRILNLAGNRLEHLQVGDFDGMI--RLDILDLTGNQLAELKPLEMT 435

  Fly   595 DLEALRKLHLDDNKIDKIERRAFMNLDELEYLSLRGNKINNLADE-------SFQNLP-KLEI-- 649
            .|.:|:.|.:..|.|.|:| :.|..|..|...:|..|:|:.::.|       ...|:| ||||  
  Fly   436 LLPSLKILKVAYNNITKLE-QDFKGLPVLCQANLTNNQISTISSELVTNTRCKNHNVPGKLEIHL 499

  Fly   650 ------LDMAFNQL 657
                  .|:..|:|
  Fly   500 DDNPIMCDVGLNEL 513

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
chpNP_001263137.1 LRR <84..320 CDD:443914 64/259 (25%)
leucine-rich repeat 84..103 CDD:275380 3/20 (15%)
leucine-rich repeat 104..128 CDD:275380 8/23 (35%)
leucine-rich repeat 129..152 CDD:275380 9/22 (41%)
leucine-rich repeat 153..177 CDD:275380 9/23 (39%)
leucine-rich repeat 178..201 CDD:275380 9/23 (39%)
leucine-rich repeat 202..226 CDD:275380 7/23 (30%)
leucine-rich repeat 227..250 CDD:275380 5/22 (23%)
leucine-rich repeat 251..279 CDD:275380 0/27 (0%)
leucine-rich repeat 280..326 CDD:275380 10/46 (22%)
leucine-rich repeat 327..348 CDD:275380 4/20 (20%)
leucine-rich repeat 352..375 CDD:275380 4/22 (18%)
PPP1R42 355..564 CDD:455733 44/210 (21%)
leucine-rich repeat 376..401 CDD:275380 3/24 (13%)
leucine-rich repeat 426..450 CDD:275378 5/23 (22%)
leucine-rich repeat 451..474 CDD:275380 3/22 (14%)
LRR_8 473..559 CDD:404697 25/87 (29%)
leucine-rich repeat 475..524 CDD:275380 10/50 (20%)
leucine-rich repeat 500..519 CDD:275380 3/20 (15%)
leucine-rich repeat 525..548 CDD:275380 8/22 (36%)
LRR <540..>834 CDD:443914 40/134 (30%)
leucine-rich repeat 549..574 CDD:275380 11/24 (46%)
leucine-rich repeat 575..598 CDD:275380 5/22 (23%)
leucine-rich repeat 599..622 CDD:275380 8/22 (36%)
leucine-rich repeat 623..646 CDD:275380 7/30 (23%)
leucine-rich repeat 647..730 CDD:275380 6/19 (32%)
leucine-rich repeat 648..673 CDD:275380 5/18 (28%)
leucine-rich repeat 674..705 CDD:275380
LRR <730..1081 CDD:443914
leucine-rich repeat 731..754 CDD:275380
leucine-rich repeat 755..778 CDD:275380
leucine-rich repeat 779..802 CDD:275380
leucine-rich repeat 803..823 CDD:275380
leucine-rich repeat 852..876 CDD:275380
leucine-rich repeat 877..900 CDD:275380
leucine-rich repeat 901..925 CDD:275380
leucine-rich repeat 926..946 CDD:275380
leucine-rich repeat 947..970 CDD:275380
leucine-rich repeat 971..993 CDD:275380
leucine-rich repeat 994..1014 CDD:275380
leucine-rich repeat 1019..1042 CDD:275380
ltlNP_729265.1 LRR 65..476 CDD:443914 133/577 (23%)
leucine-rich repeat 65..86 CDD:275380 3/20 (15%)
leucine-rich repeat 87..110 CDD:275380 8/22 (36%)
leucine-rich repeat 111..134 CDD:275380 9/23 (39%)
leucine-rich repeat 135..158 CDD:275380 9/23 (39%)
leucine-rich repeat 159..180 CDD:275380 8/20 (40%)
leucine-rich repeat 181..203 CDD:275380 3/21 (14%)
leucine-rich repeat 204..226 CDD:275380 6/21 (29%)
leucine-rich repeat 227..249 CDD:275380 7/59 (12%)
leucine-rich repeat 250..272 CDD:275380 9/53 (17%)
leucine-rich repeat 273..296 CDD:275380 7/34 (21%)
leucine-rich repeat 297..315 CDD:275380 5/52 (10%)
leucine-rich repeat 320..335 CDD:275378 3/14 (21%)
leucine-rich repeat 344..366 CDD:275380 9/47 (19%)
leucine-rich repeat 367..391 CDD:275380 9/25 (36%)
leucine-rich repeat 392..415 CDD:275380 11/24 (46%)
leucine-rich repeat 416..439 CDD:275380 5/22 (23%)
leucine-rich repeat 440..462 CDD:275380 8/22 (36%)
leucine-rich repeat 463..483 CDD:275380 5/19 (26%)
Blue background indicates that the domain is not in the aligned region.

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