DRSC/TRiP Functional Genomics Resources

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Protein Alignment chp and Gp5

DIOPT Version :10

Sequence 1:NP_001263137.1 Gene:chp / 43690 FlyBaseID:FBgn0267435 Length:1338 Species:Drosophila melanogaster
Sequence 2:NP_036927.2 Gene:Gp5 / 25259 RGDID:2724 Length:567 Species:Rattus norvegicus


Alignment Length:495 Identity:129/495 - (26%)
Similarity:200/495 - (40%) Gaps:105/495 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   138 DLVEIPSKSLRHLQKLRHLDLGYNHITHIQHDSFRGLEDSLQTLILRENCISQLMSHSFSGLLIL 202
            |.|:....|:.|:.:|                   ||..:|..::|.......|.||||||:.:|
  Rat    31 DAVQCSGGSVAHIAEL-------------------GLPTNLTHILLFRMDRGVLQSHSFSGMTVL 76

  Fly   203 ETLDLSGNNLFEIDPNVFVDGMPRLTRLLLTDNILSEIPYDALGPLKSLRTLDISHNVIWSLSGN 267
            :.|.||.:::..|||..|.| :.:|..|.||.|.:|.:|...|..:..|..|.:.||.:..|..|
  Rat    77 QRLMLSDSHISAIDPGTFND-LVKLKTLRLTRNKISHLPRAILDKMVLLEQLFLDHNALRDLDQN 140

  Fly   268 ETYEIKASTKLNLDNLHLEYNHIEVLPPNSFKYFDTVNRTFFDGNPIHTLREDAFKPARIREIYM 332
            ...::     |||.:|.|..|.:..||.|.|                                  
  Rat   141 LFQKL-----LNLRDLCLNQNQLSFLPANLF---------------------------------- 166

  Fly   333 RYCGLTNISPVAFDSLVNSLQILDLSGNNLTKLHHKLFNNFDVLRVISMRDNKIKIQKPTETFNA 397
                          |.:..|::||||.||||.|...|..            .:||::|.....| 
  Rat   167 --------------SSLGKLKVLDLSRNNLTHLPQGLLG------------AQIKLEKLLLYSN- 204

  Fly   398 VHYTLLKLDLSGDRNDPTNLQTLRKMRNMRSLSISRLGSSSVGPEDFKDFGVELEDLQITRASLS 462
               .|:.|| ||         .|..:..:..|.:.|....|:.|..|...| .|..|.::...|.
  Rat   205 ---RLMSLD-SG---------LLANLGALTELRLERNHLRSIAPGAFDSLG-NLSTLTLSGNLLE 255

  Fly   463 GIQSHAFKHVRGLKRLDFSENGISSIENDAFHEIGHSLISLKMSHGYSGSALPAEPLRHLTSLQE 527
            .:....|.||..:.||...||.:..:....|.|:. .|..|.: :|.....|||...|:|:.||.
  Rat   256 SLPPALFLHVSCVTRLTLFENPLEELPEVLFGEMA-GLRELWL-NGTHLRTLPAAAFRNLSGLQT 318

  Fly   528 LDFSNNH-ISSMSDTSFHFLKNLRLLELHDNRIEQVLKGTFQGDIHSKLEEISLRFNHLTSISQH 591
            |..:.|. :|::....||.|..||:|.||.|.:|::.:...:|  ..:|.::|||.|.|.::.:.
  Rat   319 LGLTRNPLLSALPRGMFHGLTELRVLALHTNALEELPEDALRG--LGRLRQVSLRHNRLRALPRT 381

  Fly   592 TFFDLEALRKLHLDDNKIDKIERRAFMNLDELEYLSLRGN 631
            .|.:|.:|..:.|:.|::..:....|..|.:|..:.|..|
  Rat   382 LFRNLSSLVTVQLEHNQLKTLPGDVFAALPQLTRVLLGHN 421

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
chpNP_001263137.1 LRR <84..320 CDD:443914 49/181 (27%)
leucine-rich repeat 84..103 CDD:275380
leucine-rich repeat 104..128 CDD:275380
leucine-rich repeat 129..152 CDD:275380 4/13 (31%)
leucine-rich repeat 153..177 CDD:275380 3/23 (13%)
leucine-rich repeat 178..201 CDD:275380 9/22 (41%)
leucine-rich repeat 202..226 CDD:275380 9/23 (39%)
leucine-rich repeat 227..250 CDD:275380 8/22 (36%)
leucine-rich repeat 251..279 CDD:275380 6/27 (22%)
leucine-rich repeat 280..326 CDD:275380 8/45 (18%)
leucine-rich repeat 327..348 CDD:275380 0/20 (0%)
leucine-rich repeat 352..375 CDD:275380 11/22 (50%)
PPP1R42 355..564 CDD:455733 61/209 (29%)
leucine-rich repeat 376..401 CDD:275380 4/24 (17%)
leucine-rich repeat 426..450 CDD:275378 6/23 (26%)
leucine-rich repeat 451..474 CDD:275380 6/22 (27%)
LRR_8 473..559 CDD:404697 28/86 (33%)
leucine-rich repeat 475..524 CDD:275380 14/48 (29%)
leucine-rich repeat 500..519 CDD:275380 6/18 (33%)
leucine-rich repeat 525..548 CDD:275380 8/23 (35%)
LRR <540..>834 CDD:443914 27/92 (29%)
leucine-rich repeat 549..574 CDD:275380 8/24 (33%)
leucine-rich repeat 575..598 CDD:275380 8/22 (36%)
leucine-rich repeat 599..622 CDD:275380 5/22 (23%)
leucine-rich repeat 623..646 CDD:275380 3/9 (33%)
leucine-rich repeat 647..730 CDD:275380
leucine-rich repeat 648..673 CDD:275380
leucine-rich repeat 674..705 CDD:275380
LRR <730..1081 CDD:443914
leucine-rich repeat 731..754 CDD:275380
leucine-rich repeat 755..778 CDD:275380
leucine-rich repeat 779..802 CDD:275380
leucine-rich repeat 803..823 CDD:275380
leucine-rich repeat 852..876 CDD:275380
leucine-rich repeat 877..900 CDD:275380
leucine-rich repeat 901..925 CDD:275380
leucine-rich repeat 926..946 CDD:275380
leucine-rich repeat 947..970 CDD:275380
leucine-rich repeat 971..993 CDD:275380
leucine-rich repeat 994..1014 CDD:275380
leucine-rich repeat 1019..1042 CDD:275380
Gp5NP_036927.2 LRR_8 <64..110 CDD:404697 21/46 (46%)
LRR 1 75..96 8/20 (40%)
leucine-rich repeat 76..99 CDD:275380 9/23 (39%)
LRR 95..424 CDD:443914 105/412 (25%)
LRR 2 99..120 8/20 (40%)
leucine-rich repeat 100..123 CDD:275380 8/22 (36%)
LRR 3 123..144 6/20 (30%)
leucine-rich repeat 124..147 CDD:275380 6/27 (22%)
LRR 4 147..168 9/68 (13%)
leucine-rich repeat 148..171 CDD:275380 9/70 (13%)
LRR 5 171..193 11/33 (33%)
leucine-rich repeat 172..195 CDD:275380 11/34 (32%)
LRR 6 195..216 9/34 (26%)
leucine-rich repeat 196..219 CDD:275380 8/36 (22%)
LRR 7 219..240 5/20 (25%)
leucine-rich repeat 220..243 CDD:275380 6/23 (26%)
LRR 8 243..264 4/20 (20%)
leucine-rich repeat 244..267 CDD:275380 6/22 (27%)
LRR 9 267..288 5/20 (25%)
leucine-rich repeat 268..291 CDD:275380 6/23 (26%)
LRR 10 291..312 6/21 (29%)
leucine-rich repeat 292..315 CDD:275380 8/23 (35%)
LRR 11 315..337 6/21 (29%)
leucine-rich repeat 316..338 CDD:275380 7/21 (33%)
LRR 12 340..361 7/20 (35%)
leucine-rich repeat 341..364 CDD:275380 8/24 (33%)
LRR 13 364..385 7/20 (35%)
leucine-rich repeat 365..388 CDD:275380 8/22 (36%)
LRR 14 388..409 4/20 (20%)
leucine-rich repeat 389..410 CDD:275380 4/20 (20%)
PCC 394..>458 CDD:188093 7/28 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 474..499
Blue background indicates that the domain is not in the aligned region.

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