DRSC/TRiP Functional Genomics Resources

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Protein Alignment tll and rxrgb

DIOPT Version :10

Sequence 1:NP_524596.1 Gene:tll / 43656 FlyBaseID:FBgn0003720 Length:452 Species:Drosophila melanogaster
Sequence 2:XP_005160723.1 Gene:rxrgb / 436617 ZFINID:ZDB-GENE-040718-34 Length:465 Species:Danio rerio


Alignment Length:439 Identity:119/439 - (27%)
Similarity:185/439 - (42%) Gaps:126/439 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 SPAASSRILYHVPCKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQKQGLCVVDKTHR 85
            ||.:.|:   |: |.:|.|.|||||||:|:|:||.|||||:||:...|.|:..|:  |::||..|
Zfish   132 SPGSLSK---HI-CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDIKE--CLIDKRQR 190

  Fly    86 NQCRACRLRKCFEVGMNKDAVQHE--RGPRNS------TLRRHMAMYKDAMMGAGEMPQIPAEIL 142
            |:|:.||.:||..:||.::|||.|  ||...|      |.|.:..|..|.::.|           
Zfish   191 NRCQYCRYQKCLAMGMKREAVQEERQRGKEKSDTEVETTSRFNEDMPVDKILDA----------- 244

  Fly   143 MNTAALTGFPGVPMPMPGLPQRAGHHPAHMAAFQPPPSAAAVLDLSV-PRVPHHPVHQGHHGFFS 206
                                                       :||| |:               
Zfish   245 -------------------------------------------ELSVEPK--------------- 251

  Fly   207 PTAAYMNALATRALPPTPPLMAAEHIKETAAEHLFKNVNWIKSVRAFTELPMPDQLLLLEESWKE 271
             |..|     |.:.|.........:|...|.:.||..|.|.|.:..|::||:.||::||...|.|
Zfish   252 -TETY-----TESSPSNSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNE 310

  Fly   272 FFILAMAQYLMPMNFAQL----LFVYESENANREIMGMVTREVHAFQEVLNQLCHLNIDSTEYEC 332
            ..|.:.:...:.:....|    |.|:.| :|:...:|.:...|  ..|:::::..:.:|.||..|
Zfish   311 LLIASFSHRSITVKDGILLGTGLHVHRS-SAHSAGVGSIFNRV--LTELVSKMKDMQMDKTELGC 372

  Fly   333 LRAISLFRKSPPSASSTEDLANSSILTGSGSPNSSASAESRGLLESGKVAAMHNDARSALHNYIQ 397
            ||||.||                             :.:::||..|.:|.|:.....::|..|.:
Zfish   373 LRAIVLF-----------------------------NPDAKGLSNSLEVEALREKVYASLETYTK 408

  Fly   398 RTHPSQPMRFQTLLGVVQLMHKVSSFTIEELFFRKTIGDITIVRLISDM 446
            :.:|.||.||..||..:..:..:....:|.|||.|.|||..|...:.:|
Zfish   409 QKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 457

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tllNP_524596.1 NR_DBD_TLX 25..117 CDD:143537 45/99 (45%)
NR_LBD 215..436 CDD:472173 57/224 (25%)
rxrgbXP_005160723.1 Nuc_recep-AF1 27..136 CDD:463363 2/3 (67%)
NR_DBD_RXR 139..215 CDD:143514 40/78 (51%)
NR_LBD_RXR_like 235..443 CDD:132741 64/314 (20%)

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