DRSC/TRiP Functional Genomics Resources

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Protein Alignment tll and nhr-236

DIOPT Version :10

Sequence 1:NP_524596.1 Gene:tll / 43656 FlyBaseID:FBgn0003720 Length:452 Species:Drosophila melanogaster
Sequence 2:NP_500190.3 Gene:nhr-236 / 189677 WormBaseID:WBGene00021417 Length:283 Species:Caenorhabditis elegans


Alignment Length:397 Identity:92/397 - (23%)
Similarity:149/397 - (37%) Gaps:141/397 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 CKVCRDHSSGKHYGIYACDGCAGFFKRSIRRSRQYVCKSQKQGLCVVDKTHRNQCRACRLRKCFE 98
            |:||.|.:||:|||:.:||||.|||||||||:.:|.||  :.|.||:|.|.||||:|||.:||..
 Worm    13 CRVCGDRASGRHYGVLSCDGCRGFFKRSIRRNLRYSCK--ESGDCVIDVTRRNQCQACRFQKCIT 75

  Fly    99 VGMNKDAVQHERGPRNSTLRRHMAMYKDAMMGAGEMPQIPAEILMNTAALTGFPGVPMPMPGLPQ 163
            |.||:.||||||                  :||...|: |.:.|:....:.        .||:|:
 Worm    76 VAMNRHAVQHER------------------LGAPPEPK-PTQTLIKAKRIR--------KPGIPE 113

  Fly   164 RAGHHPAHMAAFQPPPSAAAVLDLSVPRVPHHPVHQGHHGFFSPTAAYMNALATRALPPTPPLMA 228
                                |:|                                  |.:.|:..
 Worm   114 --------------------VID----------------------------------PISDPISC 124

  Fly   229 AEHIKETAAEHLFKNVNWIKSVRAFTELPMPDQLLLLEESWKEFFILAMAQYLMPMNFAQLLFVY 293
            ...:           :.|..|:......|..|:.::....|...|:.    :::..:...|:   
 Worm   125 LSAV-----------IRWWSSLPPANGFPASDRRIIFSNCWHSLFLF----HVICQSGTSLV--- 171

  Fly   294 ESENANREIMGMVTREVHAFQEVLNQLCHLNIDSTEYECLRAISLFRKSPPSASSTEDLANSSIL 358
              .:.|.|.:..:::.:.|          ||::..|...:..|.::|        :||       
 Worm   172 --NDCNNEKLRSISKTIKA----------LNLNVVEQWAITVIIIYR--------SED------- 209

  Fly   359 TGSGSPNSSASAESRGLLESGKVAAMHNDARSALHNYIQRTHPSQPMRFQTLLGVVQLMHKVSSF 423
                     ...||:....|.::.||    :....|:..|...|:..|...||.:...:.:::..
 Worm   210 ---------GRLESKSETLSTQIGAM----QILAENHAARVFQSRSTRCAQLLLIPLTIAQIAET 261

  Fly   424 TIEELFF 430
            .|.|.||
 Worm   262 EIREAFF 268

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tllNP_524596.1 NR_DBD_TLX 25..117 CDD:143537 48/82 (59%)
NR_LBD 215..436 CDD:472173 34/216 (16%)
nhr-236NP_500190.3 NR_DBD_PNR_like_1 13..88 CDD:143538 48/94 (51%)

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