DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7903 and AT2G21440

DIOPT Version :10

Sequence 1:NP_651755.2 Gene:CG7903 / 43554 FlyBaseID:FBgn0039730 Length:384 Species:Drosophila melanogaster
Sequence 2:NP_565513.1 Gene:AT2G21440 / 816683 AraportID:AT2G21440 Length:1003 Species:Arabidopsis thaliana


Alignment Length:338 Identity:73/338 - (21%)
Similarity:105/338 - (31%) Gaps:127/338 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 KVFVGSLPR-CKPEELRRLFTN-----------------------YGSVVECDVMNRCAFVHLEN 46
            ::.:.:||: ..|::|.||..:                       .|.|...:.....|||....
plant   714 RLVIYNLPKSMNPKQLNRLLVDAVTSRATKQKPCIRQIKFLQNEKKGKVDTKNYSRGVAFVEFTE 778

  Fly    47 TDMAEAAIAALNGT--IFKGQ--PIVV------------EAGRPKYGPGGGSRGQPGSGDNPGRR 95
            .:.|..|:..||..  .|..|  |::.            ||.:.::    ..|.:....|     
plant   779 HEHALVALRVLNNNPETFGPQHRPVIEFAVDNVQKLKIREAKQQQF----QQREKHNESD----- 834

  Fly    96 PSQVQGGGADKRPHESNTNFKRNFREEVGGRFSNEGPRSSNSSAAKFGPVRNE------SNYRQQ 154
              |.|..|..:.|   :..:||..||.     .|.|||..|::..|.|| |.|      ||...:
plant   835 --QQQANGEAQAP---DNKYKRKTREG-----DNTGPRKENAARFKKGP-REESKEEAKSNIAVK 888

  Fly   155 RSAPYSKGPPNNE----SSNQGQGFRNKFA---------------GGGKFGGSAGNEGRFGSNRF 200
            .:|...|.|...:    |:.:||..|.|..               ...|||...|.|.|.| .|.
plant   889 DNAAEKKRPIRTQEKPSSNKKGQLMRQKETTEKPDPKISKDLSEPRKRKFGEDRGEENRNG-QRK 952

  Fly   201 QQRDNSGPQPGRRNFKNSPTSGYRGGGN------------NSDFQGGSSSSGGGGSVNQRAGGGG 253
            :::...|                :||..            .|.|   |.||...|...|.:|   
plant   953 RKKQGQG----------------QGGAEVVDKLDLLIEKYRSKF---SQSSAKTGPQKQSSG--- 995

  Fly   254 PGPSHVRQDRRGF 266
                   |.||.|
plant   996 -------QVRRWF 1001

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7903NP_651755.2 RRM_SF 6..70 CDD:473069 18/103 (17%)
PABP-1234 <18..173 CDD:130689 43/203 (21%)
AT2G21440NP_565513.1 RRM1_RBM28_like 21..99 CDD:409847
ELAV_HUD_SF 24..411 CDD:273741
RRM2_RBM28_like 332..408 CDD:409848
RRM3_RBM28_like 561..642 CDD:409849
RRM4_RBM28_like 713..810 CDD:409850 18/95 (19%)
PTZ00121 <813..>968 CDD:173412 43/191 (23%)
Blue background indicates that the domain is not in the aligned region.

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