DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG7903 and rbm4b

DIOPT Version :10

Sequence 1:NP_651755.2 Gene:CG7903 / 43554 FlyBaseID:FBgn0039730 Length:384 Species:Drosophila melanogaster
Sequence 2:NP_989204.1 Gene:rbm4b / 394812 XenbaseID:XB-GENE-494431 Length:338 Species:Xenopus tropicalis


Alignment Length:83 Identity:34/83 - (40%)
Similarity:48/83 - (57%) Gaps:3/83 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 TAKVFVGSL-PRCKPEELRRLFTNYGSVVECDVMNRCAFVHLENTDMAEAAIAALNGTIFKGQPI 67
            :.|:.|.:| ..|..||||..|..||:|:|||::...||||:|.:..|..||..|:.|.|||:.:
 Frog    77 STKLHVSNLSTSCTSEELRAKFEEYGAVLECDIVKDYAFVHMERSAEALDAIKNLDNTEFKGKRM 141

  Fly    68 VVE--AGRPKYGPGGGSR 83
            .|:  ..|.:..||.|.|
 Frog   142 HVQLSTSRLRVTPGMGER 159

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7903NP_651755.2 RRM_SF 6..70 CDD:473069 28/64 (44%)
PABP-1234 <18..173 CDD:130689 30/68 (44%)
rbm4bNP_989204.1 RRM_SF 2..68 CDD:473069
RRM_SF 78..144 CDD:473069 28/65 (43%)
ZnF_C2HC 161..176 CDD:197667
COG5222 <162..>201 CDD:227547
Blue background indicates that the domain is not in the aligned region.

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