DRSC/TRiP Functional Genomics Resources

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Protein Alignment neo and cut-3

DIOPT Version :10

Sequence 1:NP_651733.1 Gene:neo / 43523 FlyBaseID:FBgn0039704 Length:744 Species:Drosophila melanogaster
Sequence 2:NP_495780.1 Gene:cut-3 / 174347 WormBaseID:WBGene00009041 Length:389 Species:Caenorhabditis elegans


Alignment Length:391 Identity:78/391 - (19%)
Similarity:151/391 - (38%) Gaps:91/391 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   380 IECGGGDMLARIRTSKLFNGKVYAKG--SPKSCSVDV--KSALDFELRMNYHDLECNVRQSTA-- 438
            :|||...:.....|...|.|.||.||  ..:.|..|.  :.....||..:    .|||.::.:  
 Worm    32 VECGPTSITVNFNTRNAFEGHVYVKGLFDQQECRNDEGGRQVAGIELPFD----TCNVARTRSLN 92

  Fly   439 --GRYV-NDIIIQHHDMIVTSSDLGLALACQYDLTNKSVSNGVDLDVRGDIMPALSEEVIVESPN 500
              |.:| ..:::..|...||..|....:.|.|...:|:||..:::   .|:..|...:|:   |.
 Worm    93 PKGVFVTTTVVVSFHPQFVTKVDRAYRVQCFYMEADKTVSTQIEV---SDLTTAFQTQVV---PM 151

  Fly   501 VIMRITSRDGSDMMRSAEVGDPLALKFEIVDEQ------------SPYEIFIRELVAMDGVDNSE 553
            .|.:.      :::.....|:|  ::|..:.:|            ..:...:......|| :...
 Worm   152 PICKY------EILNGGPTGEP--VQFATIGQQVYHKWTCDSETVDTFCAVVHSCTVDDG-NGDT 207

  Fly   554 ITLIDSNGCPTDHFIMGPI-YKGSVSGKMLLSNFDA--FKFPSSEVVQFRALVT--------PC- 606
            :.::|.|||..|.|::..: |...     |::..:|  :|:.....:.::..::        .| 
 Worm   208 VQILDENGCALDKFLLNNLEYPTD-----LMAGQEAHVYKYADRSQLFYQCQISITVKEPNEECA 267

  Fly   607 MPSCEPVQ----CEQEDTSGEFRSLLSYGRKRRSLNTTDDHPRPRRDIDT---SKKSAPSDMLLV 664
            .|:|...|    .:|.:.:.:|..:|    |:||....::....|.::.|   .:.:.||.:...
 Worm   268 RPTCSEPQGFGAVKQANQTAQFFRVL----KKRSAPVMENILDVRAELTTLEVLEGNLPSSLTQA 328

  Fly   665 QSIQITDKFGFKQDKQESGDFYDGNETTFTANEEGHGFCVNAIGLITAATIFL-LTQLAVIAIWT 728
            |::..:.:.|....:||                    .|:::.. |:..|:|| ||....|.| |
 Worm   329 QALVASREIGEDSFRQE--------------------LCISSFH-ISVVTVFLGLTVFVAIFI-T 371

  Fly   729 Y 729
            |
 Worm   372 Y 372

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
neoNP_651733.1 PAN_1 120..197 CDD:459635
PAN_AP_HGF 211..285 CDD:238532
PAN_1 294..373 CDD:459635
ZP 381..615 CDD:214579 53/270 (20%)
cut-3NP_495780.1 ZP 33..272 CDD:214579 51/262 (19%)
Blue background indicates that the domain is not in the aligned region.

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