DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment superdeath and APM1

DIOPT Version :10

Sequence 1:NP_651674.3 Gene:superdeath / 43444 FlyBaseID:FBgn0039640 Length:999 Species:Drosophila melanogaster
Sequence 2:NP_195035.2 Gene:APM1 / 829446 AraportID:AT4G33090 Length:879 Species:Arabidopsis thaliana


Alignment Length:912 Identity:293/912 - (32%)
Similarity:473/912 - (51%) Gaps:90/912 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   107 KYDRDVRLPHSIRPLKYNITIEPQLSGNFTFAGSVQIRIRVLEDCYNITMHAEELNISRSDASVH 171
            ::..:.|||....|.:|::.:.|.|.. .||.|:|.|.:.::.|...|.::|.:|::  :||||.
plant     3 QFKGEPRLPKFAVPKRYDLRLNPDLIA-CTFTGTVAIDLDIVADTRFIVLNAADLSV--NDASVS 64

  Fly   172 RVQNNGEPEGDGLRIHKQYLVGAKQFFVIELYDKLLKDVEYVVHLRFDGIIEDYLQGFYRSSYEV 236
            ....:   ....|...|..|....:..|:| :.::|.....|:.|.|:|::.|.::|||||:||.
plant    65 FTPPS---SSKALAAPKVVLFEEDEILVLE-FGEILPHGVGVLKLGFNGVLNDKMKGFYRSTYEH 125

  Fly   237 HNETRWVASTQFQATDARRAFPCFDEPALKANFTLHIARPRNMTTISNMPIVSS--NDHATMPSY 299
            :.|.:.:|.|||:..||||.|||:||||.||.|.:.:..|.::..:|||||:..  |.:..:.||
plant   126 NGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLEVPTDLVALSNMPIMEEKVNGNLKIVSY 190

  Fly   300 VWDHFAESLPMSTYLVAYAISDF----THISSG-NFAVWARADAIKSAEYALSVGPRILTFLQDF 359
                 .||..|||||||..:..|    .|.|.| ...|:.:.......::||.||.:.|...:::
plant   191 -----QESPIMSTYLVAIVVGLFDYVEDHTSDGIKVRVYCQVGKADQGKFALHVGAKTLDLFKEY 250

  Fly   360 FNVTFPLPKIDMIALPEFQAGAMENWGLITFRETAMLYDPGVATANNKQRVASVVGHELAHQWFG 424
            |.|.:||||:||||:|:|.||||||:||:|:||||:|||...:.|:||||||:||.|||||||||
plant   251 FAVPYPLPKMDMIAIPDFAAGAMENYGLVTYRETALLYDEQHSAASNKQRVATVVAHELAHQWFG 315

  Fly   425 NLVTPSWWSDIWLNEGFASYMEYLTADAVAPEWKQLDQFVVNELQAVFQLDALSTSHKISHEVFN 489
            ||||..||:.:|||||||:::.||..|::.||||...|| ::|.....:||.|..||.|..||.:
plant   316 NLVTMEWWTHLWLNEGFATWVSYLATDSLFPEWKIWTQF-LDESTEGLRLDGLEESHPIEVEVNH 379

  Fly   490 PQEISEIFDRISYAKGSTIIRMMAHFLTNPIFRRGLSKYLQEMAYNSATQDDLWHFLTVEAKSSG 554
            ..||.||||.|||.||:::|||:..:|...:|::.|:.|::..||::|..:|||  ..:||.|  
plant   380 AAEIDEIFDAISYRKGASVIRMLQSYLGAEVFQKSLAAYIKNHAYSNAKTEDLW--AALEAGS-- 440

  Fly   555 LLDDSRSVKEIMDTWTLQTGYPVVKVSRHPNSDVIRLEQVRFVYTNTTREDESLLWYIPITFTTD 619
                ...|.::|.:||.|.||||  ||.......:.|||.||:.:.:..|.:   |.:|:|....
plant   441 ----GEPVNKLMSSWTKQKGYPV--VSAKIKDGKLELEQSRFLSSGSPGEGQ---WIVPVTLCCG 496

  Fly   620 SELNFANTRPTTWMPRTKLYELENREL---SLA----------KWFIFNVQQTGYYRVNYDLENW 671
            |   :...:......::..|:|  :||   |:|          .|...||.|.|:|||.||    
plant   497 S---YEKRKNFLLESKSGAYDL--KELLGCSIADGSDKINGTCSWIKINVDQAGFYRVKYD---- 552

  Fly   672 MAITEHLMDVDNFEDIAPANRAQLIDDVMNLARGSYLSYETAMNLTRYLGHELGHVPWKAAISNF 736
            .::...|.:....:.:...:|..::||...|......|..:.:.|......||.:    ..:||.
plant   553 DSLAAGLRNATESQSLTSIDRYGILDDSFALTMARQQSLASLLTLCSAYKKELDY----TVLSNL 613

  Fly   737 IFIDSMFVNSG---DYDL---LKNYLLKQLKKVYDQVGFKDSQDESEDILVKLKRADILSMACHL 795
            |.|....|..|   :.:|   :|::.:...:....::|:...|.||.  |..:.|.::|:.....
plant   614 IAISYKVVKIGADANQELMSGIKHFFIGVFQFAAGKLGWDPKQGESH--LDAMLRGEVLTALAVF 676

  Fly   796 GHQECIAEASRHFQNWMQTPNPDSNNPIV-PNLRGVVYCSAIQYGTEYE---WDFAFERFLKTNV 856
            ||.|.:.||.|.|..::    .|.|.|:: |::|...|.:.:|...:.:   ::.....:.:|::
plant   677 GHDETLKEAVRRFDAFL----ADRNTPLLPPDIRRAAYVAVMQRANKSDKSGYESLLRVYRETDL 737

  Fly   857 PGEKDLLLNALGCSKEPWLLYRFLRRGISGQHIRKQDLFRVFAAVSTTVVGQNIAFDFLRNNWQE 921
            ..||..:|.:|....:|.::...|...:|.: :|.||.....:.||..  |:.:|:.:|:..|: 
plant   738 SQEKTRILGSLASCPDPTIVQDVLNFVLSDE-VRNQDALYGLSGVSWE--GREVAWKWLQEKWE- 798

  Fly   922 IKTYMGSQMSSIHTLFKFAT------KGFNSKFQLGEFENFVKDAHWDYDRPVQQIVEHIETSVD 980
               |:|:...|...:.:|.:      ..|....::.||  |...:.....|.::|.:|.:..:.:
plant   799 ---YIGNTWGSGFLITRFISAVVSPFASFEKAKEVEEF--FATRSKPSMARTLKQSIERVHINAN 858

  Fly   981 WM 982
            |:
plant   859 WV 860

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
superdeathNP_651674.3 M1_APN-Q_like 121..571 CDD:341064 188/456 (41%)
ERAP1_C 651..976 CDD:463368 76/340 (22%)
APM1NP_195035.2 M1_APN-Q_like 18..453 CDD:341064 188/455 (41%)
ERAP1_C 536..855 CDD:463368 76/341 (22%)

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