DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1523 and Rbcn-3B

DIOPT Version :10

Sequence 1:NP_651635.2 Gene:CG1523 / 43400 FlyBaseID:FBgn0039601 Length:621 Species:Drosophila melanogaster
Sequence 2:NP_569960.2 Gene:Rbcn-3B / 31155 FlyBaseID:FBgn0023510 Length:1525 Species:Drosophila melanogaster


Alignment Length:651 Identity:128/651 - (19%)
Similarity:198/651 - (30%) Gaps:202/651 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    87 PDAHTDSVNCIKFFDERL-FATGSDDFTVALWDLRNMKQKLR---VLHGHSNWVKNIEYSS---K 144
            |.|.|..::.:...|::. ..||..|..:.||.:.....|:.   :|.|||..|..:..:|   :
  Fly    15 PTAPTHCISSVFLSDDQFTLVTGCYDGQICLWQVEPTTLKMSPRCLLVGHSAPVLCLVRASLLPE 79

  Fly   145 DKLLVSSGFDGSIFTWDINSQTEQGLISQRVFHASGLMRCRISPTGDKLVLCTSGGY---IMIIH 206
            :..||||..:|.:.|||:........:.....|.. :.....:.:.|..:.|.  ||   ||::.
  Fly    80 NNFLVSSSENGEMCTWDLTDGKCMEAVKLPQVHTQ-IQSYHTANSEDVRLFCI--GYYAEIMVMD 141

  Fly   207 HLDLTTLHKDLCGFRPGIYRLMQLGEQYIPQAAKYDHVFSKRQKKNRVELVTDFP---------- 261
            ...|..::              .|..:..|......||....::|:.|.|.....          
  Fly   142 PFSLEVIY--------------VLSSKVKPDWISAIHVLRPMRRKDDVVLAITTTGTVKVWTLTG 192

  Fly   262 -ENNDAEMIMALQ---------IHPHCCCMLTRNVSCDEQSEWTCIHDINEEPVRSEDEQDEVEP 316
             ||..||.|...:         |..:||....|.|.......|. |:|..:..|..    ..:.|
  Fly   193 NENKHAEPIYENESKEIRCLNAITMNCCAQNQRTVLLVCTKYWQ-IYDAGDFTVLC----SVIAP 252

  Fly   317 QPKRKRVSTTLAS-RSSLNESQDQDTVGLTPR---------QARRPLRVSSVQVFQLDNSG---- 367
            ..:|.:....:.| |..|...:.:..:...|.         .::..:|.:....:.|.::|    
  Fly   253 ARERWQGGDFITSDRVMLWTDEGKGYLYKLPANCIPDNKEFHSKSVVRDAPYLYYVLQHAGDKVL 317

  Fly   368 ---------AGRGASDNPSVLTRSDSFIPDIWAAEVTVQERAIRQNRARVSNNHVSGYNFVYAIS 423
                     .|.|...|   |.|.||                             .||..|:.:.
  Fly   318 SCPPAMKLLQGAGGQHN---LLRGDS-----------------------------EGYISVWNVP 350

  Fly   424 SGVLPLRQLGANSLMGSSTSPRPL--------------TTPPPTE-SNQSSSSSSSSSSSSSSSS 473
            .  :||..:  :.|......||||              ..|||.. .:|.|..:.|....:||..
  Fly   351 E--VPLDNI--SILQAKQMPPRPLKPHVCTSLVEAWSIMDPPPVGILDQLSRITESPVKLTSSIY 411

  Fly   474 SSNNSDTTVRLEIGNRLRLRSFNSPVTTPTFKENGHSILVNAKKLLYYAAETNTKPGFIKEPG-- 536
            ....|    ||.||                 :|:|..::|.|.:.:........|..|...|.  
  Fly   412 LPQQS----RLVIG-----------------REDGSIVIVPATQTVMMQLLVGIKQNFSDWPSHQ 455

  Fly   537 --FSADGRVVC--------SPYGNGVRLFG-----------YS---------------------E 559
              :...|||.|        |.|.....|.|           ||                     |
  Fly   456 ILYGHRGRVNCLLCPSMIHSRYEKSHLLSGGIDFAVCLWDLYSGSLLHRFCVHAGEITQLLVPPE 520

  Fly   560 DC--------CDYPKCQAFEEVKSKPRKLVELAKITEHQDVVLCAKFSPREPLLVTGCNGGEV-T 615
            .|        |......:...|..:.||.|.||  :.|...|:..|:.|.:..|:.||:.|.| .
  Fly   521 SCSPRILKCICSVASDHSVTLVSLQERKCVTLA--SRHLFPVVTIKWRPLDDFLIVGCSDGSVYV 583

  Fly   616 W 616
            |
  Fly   584 W 584

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1523NP_651635.2 WD40 <46..>212 CDD:441893 32/134 (24%)
WD40 repeat 51..87 CDD:293791 128/651 (20%)
WD40 repeat 95..129 CDD:293791 7/37 (19%)
WD40 repeat 136..174 CDD:293791 10/40 (25%)
WD40 repeat 181..210 CDD:293791 6/31 (19%)
Rbcn-3BNP_569960.2 WD40 repeat 20..63 CDD:293791 8/42 (19%)
WD40 <22..202 CDD:475233 40/196 (20%)
WD40 repeat 68..107 CDD:293791 10/38 (26%)
WD40 repeat 118..152 CDD:293791 7/49 (14%)
WD40 repeat 160..204 CDD:293791 10/43 (23%)
WD40 repeat 212..251 CDD:293791 9/43 (21%)
WD40 repeat 406..459 CDD:293791 14/73 (19%)
WD40 453..>597 CDD:475233 29/134 (22%)
WD40 repeat 513..555 CDD:293791 9/43 (21%)
WD40 repeat 560..596 CDD:293791 9/25 (36%)
GvpP <735..816 CDD:444004
WD40 <1408..>1469 CDD:441893
WD40 repeat 1439..1466 CDD:293791
Blue background indicates that the domain is not in the aligned region.

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