DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42534 and mib1

DIOPT Version :10

Sequence 1:NP_651560.2 Gene:CG42534 / 43298 FlyBaseID:FBgn0260487 Length:1555 Species:Drosophila melanogaster
Sequence 2:NP_648826.2 Gene:mib1 / 39750 FlyBaseID:FBgn0263601 Length:1226 Species:Drosophila melanogaster


Alignment Length:749 Identity:168/749 - (22%)
Similarity:271/749 - (36%) Gaps:224/749 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   100 DPAQLTVSQSQSSSTVARRRLAEGCTSLMYACQRGDIVQVLAQMREKPELLRQRDRSHRNALHYC 164
            :||.||   ..||.|.|....           |.||||::.:.: |..::|::            
  Fly   401 NPAVLT---KVSSPTTAPPEF-----------QVGDIVKICSDV-ESIKILQR------------ 438

  Fly   165 AAQDSEGSKDLVAAASIAIAAPELLESADEDGFTPLHLAVIQGNLAMVNLLLANKADVNAVDNEG 229
                  |..:...|..:.:.....::....|.    .|.|..||.:.....||.....::..::|
  Fly   439 ------GHGEWADAMQLTLGKIGRVQQVYHDN----DLKVEVGNTSWTYNPLAVCKVASSTASDG 493

  Fly   230 HSVVHWATVCGEVESLRAVLA----------AGASVAKPDANGGTPLHYAAQ----MCGASKQDS 280
            ..    |.|....|.|.|:|.          |.....|..|||     :||:    :.||: |.|
  Fly   494 SC----APVIPSSERLSAILKKLFEPNVSGDATEEFVKAAANG-----FAARCEEYLAGAA-QPS 548

  Fly   281 KQQASSSN-------------------SSRLSLEILGILLSHPQSSVDVQDKDGRQPLLWAASAG 326
            ...||.|:                   |....:|::.:||.| ...|:::||||.:.:..||...
  Fly   549 TSSASPSSGPDVNVNGVFAGHTALQAASQNGHIEVIQVLLRH-AVDVEIEDKDGDRAVHHAAFGD 612

  Fly   327 SAKAVIALVKAGARVESSDKDGLTALHCAGSRGHTECIDTLIGLCGAPTDLIDSNGCTALHYAVT 391
            .|..:..|.||||.:.:.:|...|:||.|.::||...:.||:.|           ||        
  Fly   613 EAAVIEILAKAGADLNARNKRRQTSLHIAVNKGHLNVVKTLLTL-----------GC-------- 658

  Fly   392 LGHADATARLLDLEADPNRQDRKGRTPAHCGCSKGQFETLKLLKERGANLWLRNAKGDLPLHEAA 456
                           .|:.||.:|.||.|...||...|.|.||.:.||::.|.|..|...||.||
  Fly   659 ---------------HPSLQDSEGDTPLHDAISKEHDEMLSLLLDFGADITLNNNNGFNALHHAA 708

  Fly   457 ASGRRELLEWLLAQ--RPKQVNTTSNDGRSLLHIAAANDYTDMCKLLLDYGADVNAVYRNSRGLV 519
            ..|....::.||.:  ||..|....:||.:.||:||.|::.::.:||:..| ..|...:|..  :
  Fly   709 LKGNPSAMKILLTKTNRPWIVEEKKDDGYTALHLAALNNHVEIAELLVHMG-KANMDRQNVN--L 770

  Fly   520 LTPLDGALQRGHRSTAKFLQANGGQPANKVRLSSRRTGNPFHETNATDMVRPLKYVEKEELHDLR 584
            .|.|..|::|.|....|.|..:|..    :.:..:....|.||......:..||     :|.|:.
  Fly   771 QTALHLAVERQHVQIVKLLVQDGAD----LNIPDKDGDTPLHEALRHHTLSQLK-----QLQDVE 826

  Fly   585 SSKKYVVYLKRSDSDNGNENGKADVGDGDCSCSEQTYRKEQRLRHVCRRHKRRQLRRRTSSCGES 649
            ...|.::.|:.::    |:...|.:     :|.                                
  Fly   827 GFGKLLMGLRNAN----NKKASASI-----ACF-------------------------------- 850

  Fly   650 KHERCSEICRSKSNIEIRRRKSRERYASSSEWEEESAEDSCEN---C-----CYHKRQKD--RVV 704
                   :..:.:::.::.||            :::..|.|.:   |     ||::|:.|  .:.
  Fly   851 -------LAANGADLTLKNRK------------QQTPLDLCPDPNLCKTLVKCYNERKTDDSELP 896

  Fly   705 NRKRSTSSRKSKNRDSSDPDEKNHSENH--SSPEKGSRKPLAVNGDHQADNGKDQTSTKERPPSA 767
            .....||| .::.|.:|....::.|.|.  ||....|..|.|.:....|.||      .....|.
  Fly   897 GNVAGTSS-SARARAASGSLNQSSSVNMPLSSLAASSTFPAASSSSIFALNG------IANEMSQ 954

  Fly   768 SRHQTPPTKEGTFIKSPTQSAKSEKSGQMDNLLV 801
            |.|:.||                :.|..:|..||
  Fly   955 SLHEDPP----------------KSSASLDECLV 972

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42534NP_651560.2 Ank_2 127..226 CDD:463710 16/98 (16%)
ANK repeat 195..226 CDD:293786 7/30 (23%)
ANKYR 209..514 CDD:440430 92/339 (27%)
ANK repeat 228..259 CDD:293786 9/40 (23%)
ANK repeat 314..345 CDD:293786 10/30 (33%)
ANK repeat 347..379 CDD:293786 9/31 (29%)
ANK repeat 381..412 CDD:293786 3/30 (10%)
ANK repeat 414..479 CDD:293786 25/66 (38%)
ANK repeat 419..445 CDD:293786 10/25 (40%)
ANK repeat 481..511 CDD:293786 11/29 (38%)
Ank_2 486..572 CDD:463710 21/85 (25%)
ANK repeat 516..542 CDD:293786 7/25 (28%)
mib1NP_648826.2 MIB_HERC2 109..166 CDD:461991
ZZ_Mind_bomb 177..221 CDD:239079
MIB_HERC2 248..313 CDD:461991
SH3_15 340..405 CDD:465720 2/3 (67%)
SH3_15 418..482 CDD:465720 15/97 (15%)
ANKYR 559..824 CDD:440430 84/311 (27%)
ANK repeat 568..598 CDD:293786 6/30 (20%)
ANK repeat 600..631 CDD:293786 10/30 (33%)
ANK repeat 633..664 CDD:293786 12/64 (19%)
ANK repeat 666..695 CDD:293786 12/28 (43%)
ANK repeat 699..733 CDD:293786 11/33 (33%)
ANK repeat 735..767 CDD:293786 11/32 (34%)
ANK repeat 769..800 CDD:293786 8/36 (22%)
ANK repeat 802..862 CDD:293786 12/112 (11%)
RING-HC_MIB1_rpt1 968..1005 CDD:438384 3/5 (60%)
RING-HC_MIB1_rpt2 1015..1052 CDD:438385
RING-HC_MIB1_rpt3 1181..1226 CDD:438387
Blue background indicates that the domain is not in the aligned region.

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