DRSC/TRiP Functional Genomics Resources

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Protein Alignment: l(3)mbt and Scml4

Sequence 1:NP_733209.1 Gene:l(3)mbt FlyBaseID:FBgn0002441 Length:1477 Species:Drosophila melanogaster
Sequence 2:XP_006256634.1 Gene:Scml4 RGDID:1310898 Length:414 Species:Rattus norvegicus

Alignment Length:73 Identity:26/74 (35%)
Similarity:40/74 (54%) Gaps:8/74 (11%)


  Fly  1291 KLDDVR----TNPLHWTSWDVCEYIERALDSTDI---AKVIFEQDIDGRALLMLGRKELDTYLKL 1348
            ::.|.|    .||..||..||..:::.| |...:   .::..:.:|||.|||:|....:..||.|
  Rat   331 EIQDTRRPSSRNPSTWTVEDVVRFVKDA-DPQALGPHVELFRKHEIDGNALLLLRSDMIMKYLGL 394

  Fly  1349 KVGPAVKL 1356
            |:|||:||
  Rat   395 KLGPALKL 402

Known Domains:


GeneSequenceDomainRegion External IDIdentity
l(3)mbtNP_733209.1 MBT 822..918 CDD:214723
MBT 929..1028 CDD:214723
MBT 1038..1130 CDD:214723
SAM_PNT 1279..1366 CDD:280377 26/74 (35%)
Scml4XP_006256634.1 DUF3588 95..204 CDD:288954
SAM_Scm 340..411 CDD:188977 24/65 (37%)
SAM 343..411 CDD:197735 23/62 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 C87387448
eggNOG 1 0.900 E1_KOG3766
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.830

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