DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(3)mbt and Scml2

DIOPT Version :10

Sequence 1:NP_733209.1 Gene:l(3)mbt / 43288 FlyBaseID:FBgn0002441 Length:1477 Species:Drosophila melanogaster
Sequence 2:XP_006528733.1 Gene:Scml2 / 107815 MGIID:1340042 Length:1136 Species:Mus musculus


Alignment Length:471 Identity:119/471 - (25%)
Similarity:167/471 - (35%) Gaps:134/471 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   569 LPGISIIKAESLPLSREDFERSLRCDEQVPQTPPKSSSSSSSGSHASEMSPPPKLADPKPSSPPA 633
            |.|...:.||..|.|.|..|            |......:.||...:|..||     ......||
Mouse    10 LAGSGELVAEPGPSSTEARE------------PATGVQLAGSGQLVAEQGPP-----STGGREPA 57

  Fly   634 KNAKKANDHD--ANPSPSSKTNDFKKSMMQNLNMLKWRGQQPANLQNSTVRFELNEFNFLQINER 696
            ...:.|...:  |.|.|||.                 ..::||..:.::   .|.:    |:.::
Mouse    58 TGVQLAGSGELVAEPGPSST-----------------EAREPATAEGTS---GLGQ----QVTKQ 98

  Fly   697 CQPRQG---PAAYFE----RPLYDRPGRRPSACVHPLLYLCQRCNFHGPAADFLAPHFCSVGCVR 754
            ..|..|   ||...:    ..|...||                                      
Mouse    99 GHPSTGEMEPATGVQLAGSGELVAEPG-------------------------------------- 125

  Fly   755 RSQKRRLPQSTQKESKISRTQLEQTAGTAPDLPQKRQTNYKPHKSLSAIQEQLQQRQKDKPRKPF 819
                   |.||:..   ..|:...|.|         ||..:.|                     |
Mouse   126 -------PSSTEAR---ENTEEANTMG---------QTANEDH---------------------F 150

  Fly   820 RWSEYLKSKGKDVAAPIHLFLNPFPISPNCFEIGMKLEAIDPENCSLFCVCSIVEVRGYRLKLSF 884
            .|.:|||..| .::||...|........|.|:|||||||.||.|....||.|::.:.|.||:|..
Mouse   151 DWDKYLKETG-SISAPSEYFRQSKTPPTNEFKIGMKLEARDPRNIDSVCVASVIGITGARLRLRL 214

  Fly   885 DGYSSMYDFWVNADSQDIFPPGWCDETARVLQAPKDYNSERFSWSRYLVK--TGGKAAPRALFGH 947
            ||..:..|||...||.||.|.|.|::...:||.|..|.....||..:|::  ||.:.||...|  
Mouse   215 DGSDNKNDFWRLVDSSDIQPVGTCEQGGDLLQPPLGYTLNTSSWPMFLLRVLTGSELAPAVFF-- 277

  Fly   948 LNMQQQMDVRNGFAVGMHLEAEDLNDTGKICVATVTDILDERIRVHFDGWDDCYDLWVHITSPYI 1012
             ..:....::|.|.|||.:||.|..:...||.||:..:..:::.:.||||...:|.|....|..|
Mouse   278 -KEEPPRPLQNNFIVGMKIEAVDRKNPFMICPATIGAVCGDQLHITFDGWSGAFDYWCDYDSRDI 341

  Fly  1013 HPCGWHEGRQQLIVPP 1028
            .|.||......::.||
Mouse   342 FPVGWCRLTGDVLQPP 357

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(3)mbtNP_733209.1 PRK10819 <332..>427 CDD:236768
MBT_L3MBTL1-like_rpt1 846..945 CDD:439091 42/100 (42%)
MBT_L3MBTL1-like_rpt2 957..1045 CDD:439092 25/72 (35%)
MBT_L3MBTL1-like_rpt3 1058..1130 CDD:439093
SAM_PNT 1278..1367 CDD:460486
Scml2XP_006528733.1 MBT 149..279 CDD:459242 53/154 (34%)
MBT_dScm-like_rpt2 284..358 CDD:439082 25/74 (34%)
PTZ00121 <403..>742 CDD:173412
SLED 877..986 CDD:463469
SAM_Scm 1062..1132 CDD:188977
Blue background indicates that the domain is not in the aligned region.

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