DRSC/TRiP Functional Genomics Resources

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Protein Alignment DNApol-alpha73 and pola2

DIOPT Version :9

Sequence 1:NP_733206.3 Gene:DNApol-alpha73 / 43278 FlyBaseID:FBgn0005696 Length:609 Species:Drosophila melanogaster
Sequence 2:NP_001005060.1 Gene:pola2 / 448613 XenbaseID:XB-GENE-5916783 Length:597 Species:Xenopus tropicalis


Alignment Length:650 Identity:185/650 - (28%)
Similarity:302/650 - (46%) Gaps:101/650 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MEEEL---KQQFDEMGVEPADAVLGRCAELAITYNIHDATEFVEQWMAFSLSHLQGEDPAIENLG 62
            :||||   ...|::      |.|..:..||...:.:.: .:.|.:|||||.:  :.....:.||.
 Frog     8 IEEELTVFDVNFED------DEVPEKMVELCTVHRLQE-EDMVNEWMAFSTT--RNLPLTVSNLN 63

  Fly    63 DFERKVLQLRKDKAGYKATGQKAKSYGS---PSVQDTSSLATYGVMEDDPMLDDYVSES-AVDSS 123
            ..|.:|  |.|..|..:.:.:|.|..|:   .::|:...:.|    |::.:||.|.:.: .....
 Frog    64 ILEHEV--LNKKSARPRPSQKKEKHCGNRDFNTIQELIEVET----EEENLLDSYATPAKGSQKR 122

  Fly   124 ALHTPKAKKQSDRTANLKGAALFSPASYTPQSAKRKAGLETPSNSVAGKP--GDIVDTFGHPKLL 186
            .|.||:..:....:.|.....||||||::|.:        |||.....:.  |::|.|:|.   |
 Frog   123 NLSTPEHPQSKRISVNRSPHVLFSPASFSPSA--------TPSQKYGSRTNRGEVVTTYGE---L 176

  Fly   187 AGSSWQSQMEHTVPVTQKLLHNDAPLTIANLGYMNDLLTDRCHNLRVRFNQTGPALVDKKLGQAG 251
            .|::|.........| :.....|.|||     .|...:..:..::|        .:|..|:.:.|
 Frog   177 QGTTWNGGSGRNTSV-ELFTCQDEPLT-----KMYKFMFQKLMDIR--------EVVSSKIEELG 227

  Fly   252 AA----------ECIWYPQDRQVLQSAGGLHAVGMIHSEDDGPLDAHSAFMAVLDDDVEDEMDPT 306
            |:          ..:.:|....|.       .:|.|..:.:|.|::.|   .:|:.|.|......
 Frog   228 ASLKNHFQIDEFTSVSFPAQETVT-------VLGQIGCDSNGKLNSKS---VILEGDREHSAGMQ 282

  Fly   307 LTLNFSRVKSASIFPGQVVLAKGFIPRGKTFMVEEIHTERKLTPATPL---QIDRELQ------F 362
            :.::.|.:|..|:||||||:.:|....|:.|:      ..||....||   |..:|.:      .
 Frog   283 VPVDLSELKEYSLFPGQVVIMEGTNSTGRRFV------PTKLYEGVPLPFHQPSKEFEECPQQMV 341

  Fly   363 VVASGPFTDSTDLFYEPLHDLLKYLKDHRPDVLVLTGPFLDADHKMVG--ELAETFDTFFEKMIG 425
            :.|.||||.|..:.|:.|.||:..|....||:.:|.||||||.|:.:.  :|..||:..|::.:.
 Frog   342 ITACGPFTTSDTITYDALKDLIDVLNRDCPDICILLGPFLDAKHEQIENLQLTVTFEDVFKRCLK 406

  Fly   426 GIMESI---GSHTAVLVVTSQKDAMALSVYPTPP-----PALRRTYPNLYMLPDPSLVDLDGFTL 482
            .|:|..   |.|  ::.|.|.:|.....|||.||     || :.....::.:.||..:.::|..|
 Frog   407 MIIEGTRLSGCH--LVFVPSLRDVHHDPVYPQPPFSCFEPA-KEDKDRVHFVADPCTLSVNGVIL 468

  Fly   483 GVTSTDVVDHLLSHEF--AVNAGERMHRAINHLFHQGSFYPLYPPADEDMAYDSQLALKYAQLKQ 545
            |:||||::.|:.:.|.  :|.|.:|..|.:.|:..|.|:|||||| :|::..|.:....||.:..
 Frog   469 GITSTDLLFHMGAEEISSSVGAPDRFSRILRHILTQRSYYPLYPP-NEEINVDYEAFYSYAPMPV 532

  Fly   546 LPNVLILPSDQRHFIRLVNDCLVINPGRVA-DKKGGTFARFLVAPSVPGKAANMFNSVACQVQRI 609
            .|::.|:||:.|:||:.|..|:.|||||:. ...|||:|||||.....|........::.||.||
 Frog   533 TPDIFIVPSELRYFIKDVTGCICINPGRLTKGLVGGTYARFLVKSGAMGSEGKRSPCISAQVVRI 597

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DNApol-alpha73NP_733206.3 Pol_alpha_B_N 18..>180 CDD:285602 42/167 (25%)
DNA_pol_E_B 363..561 CDD:281968 73/209 (35%)
pola2NP_001005060.1 POL12 20..585 CDD:227539 176/624 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 123 1.000 Domainoid score I5567
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H48121
Inparanoid 1 1.050 215 1.000 Inparanoid score I3520
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D239034at33208
OrthoFinder 1 1.000 - - FOG0004882
OrthoInspector 1 1.000 - - oto102729
Panther 1 1.100 - - LDO PTHR23061
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R342
SonicParanoid 1 1.000 - - X3994
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1010.190

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