DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ser and LOC100535882

DIOPT Version :10

Sequence 1:NP_524527.3 Gene:Ser / 43275 FlyBaseID:FBgn0004197 Length:1407 Species:Drosophila melanogaster
Sequence 2:XP_003200521.2 Gene:LOC100535882 / 100535882 -ID:- Length:783 Species:Danio rerio


Alignment Length:688 Identity:257/688 - (37%)
Similarity:336/688 - (48%) Gaps:133/688 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 RSLKSACNLIALILILLVHK---ISAAGNFELEILEISNTNSHLLNGYCCGMPAELRATKTIGCS 121
            |.:|...:...:.|..|..:   :.|.|.||::|.:..|....|.:|.||. |......:.....
Zfish    67 RDVKRGLHWTVICLFSLALRPQVVCAVGTFEVQIRQWQNPQGILQSGQCCD-PQSSGGQRCSSGD 130

  Fly   122 PCTTAFRLCLKEYQTTEQGASIS-TG-CSFGNATTKILGGSSFVL-------SDPGVGAIVLPFT 177
            .|.|.|:.||||||     |.:: || |::|..:|.:|||:|..|       ||...|.||:||.
Zfish   131 QCETFFKACLKEYQ-----ARVAPTGTCTYGTGSTPVLGGNSHSLHHHGNEGSDSRNGRIVIPFK 190

  Fly   178 FRWTKSFTLILQALDMYN-TSYPDAERLIEETSYSGVILPSPEWKTLDHIGRNARITYRVRVQCA 241
            :.|||||:|:::|||..| ||....|.|||....|.::.|..:|::..|.||...:.||:|.:|.
Zfish   191 YAWTKSFSLVIEALDHDNETSEAGREELIERVLLSSMLNPGEQWQSFRHHGRTFTLEYRLRFRCD 255

  Fly   242 VTYYNTTCTTFCRPRDDQFGHYACGSEGQKLCLNGWQGVNCEEAICKAGCDPVHGKCDRPGECEC 306
            ..||...|...||.|||.|||:.|.:.|.|:|..||.|..|.:|:||.||...||.||.||||:|
Zfish   256 ANYYGPLCNKLCRARDDFFGHFDCDASGIKVCKEGWTGAECRQAVCKQGCHLDHGSCDLPGECKC 320

  Fly   307 RPGWRGPLCNECMVYPGCKHGSCNGSAWKCVCDTNWGGILCDQDLNFCGTHEPCKHGGTCENTAP 371
            ..||:|.||:||..:|||.||:|. ..|||||||||||:|||:|||:||.|:|||:||||.||.|
Zfish   321 HYGWKGDLCDECETFPGCDHGTCT-EPWKCVCDTNWGGLLCDKDLNYCGNHQPCKNGGTCTNTEP 384

  Fly   372 DKYRCTCAEGLSGEQCEIVEHPCATRPCRNGGTCTLKTSNRTQAQVYRTSHGRSNMGRPVRRSSS 436
            ::|.|.|.||..|..|:|||:.|.:.||.|||||...                            
Zfish   385 NEYLCVCQEGFRGRNCDIVENACLSAPCENGGTCVED---------------------------- 421

  Fly   437 MRSLDHLRPEGQALNGSSSPGLVSLGSLQLQQQLAPDFTCDCAAGWTGPTCEINIDECAGGPCEH 501
                    |.|                          |:|.|:.|||||:|...:.:|...||..
Zfish   422 --------PSG--------------------------FSCRCSPGWTGPSCASAVQQCDSSPCGR 452

  Fly   502 GGTCIDLIGGFRCECPPEWHGDVCQVDVNECEAPHSAGIAANALLTTTATAIIGSNLSSTALLAA 566
            |.||.:...||:|.|||.|.|..||:|.||||.                                
Zfish   453 GATCQETPEGFQCLCPPFWTGRTCQLDTNECET-------------------------------- 485

  Fly   567 LTSAVASTSLAIGPCINAKECRNQPGSFACICKEGWGGVTCAENLDDCVGQCRNGATCIDLVNDY 631
                        |.|:||:.|||..|.:.|.|..||.|..|......|.|.|.||..|    .|.
Zfish   486 ------------GVCVNARSCRNLIGGYLCDCLPGWSGPNCDIWNSSCRGLCLNGGHC----KDS 534

  Fly   632 RCACASGFKGRDCETDIDECATSPCRNGGECVDMVGKFN--CICPLGYSGSLCEEAKENCTPSPC 694
            :|.|..||.|:.|:..::.|.::.|.|||:||:..|...  |.|||||:|:.||...:.|.|:||
Zfish   535 QCVCLPGFSGKLCQIAVNACDSNTCVNGGQCVERQGGTGLLCRCPLGYTGTHCETELDLCNPNPC 599

  Fly   695 -LEGHCLNTPEGYYCHCPPDRAGKHCEQLRPLCSQPPC 731
             .|..||:|..||.|.||....|..|..|:..|.:|.|
Zfish   600 PKEMPCLSTGGGYKCVCPEGYFGNECLNLKDPCHEPHC 637

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SerNP_524527.3 MNNL 83..238 CDD:462222 61/164 (37%)
DSL 220..282 CDD:128366 26/61 (43%)
EGF_CA 350..388 CDD:238011 22/37 (59%)
EGF_CA 490..526 CDD:238011 14/35 (40%)
EGF_CA 610..645 CDD:238011 12/34 (35%)
EGF_CA 647..683 CDD:238011 15/37 (41%)
EGF_CA 690..720 CDD:238011 13/30 (43%)
EGF_CA 798..833 CDD:238011
EGF_CA 879..913 CDD:238011
EGF_CA 916..952 CDD:238011
VWC_out <993..1053 CDD:214565
LOC100535882XP_003200521.2 MNNL 94..252 CDD:462222 61/163 (37%)
DSL 234..296 CDD:473190 26/61 (43%)
EGF_CA 363..400 CDD:238011 22/36 (61%)
EGF_CA 405..438 CDD:238011 18/94 (19%)
EGF_CA 446..477 CDD:238011 13/30 (43%)
EGF_CA 479..514 CDD:238011 18/78 (23%)
EGF_CA 551..588 CDD:238011 15/36 (42%)
EGF 594..623 CDD:394967 13/28 (46%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.