DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ser and dlk2

DIOPT Version :10

Sequence 1:NP_524527.3 Gene:Ser / 43275 FlyBaseID:FBgn0004197 Length:1407 Species:Drosophila melanogaster
Sequence 2:XP_001921712.2 Gene:dlk2 / 100150992 ZFINID:ZDB-GENE-081107-4 Length:378 Species:Danio rerio


Alignment Length:550 Identity:135/550 - (24%)
Similarity:181/550 - (32%) Gaps:236/550 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly   281 NCEEAI-------------CKAGCDPVHGKCDRPGECECRPGWRGPLCNECMVYPGCKHGSCNGS 332
            |||..:             ....|:..||||...|:|.|.|||.||:|::|:..|||.||:|: .
Zfish    19 NCEAQVLFSSEETSPTPSASNCTCEIGHGKCAENGDCRCDPGWGGPMCDDCVRMPGCVHGTCH-Q 82

  Fly   333 AWKCVCDTNWGGILCDQDLNFCGTHEPCKHGGTCENTAPDKYRCTCAEGLSGEQCEIVEHPC--A 395
            .|:|.|...|.|..||:|:..|...:||.:|.|||.:....|.|.|.||..|..||:...||  .
Zfish    83 PWQCSCMDGWAGRFCDKDVYVCSRQQPCHNGATCELSDSGDYSCLCPEGFHGRDCELKAGPCQKT 147

  Fly   396 TRPCRNGGTCTLKTSNRTQAQVYRTSHGRSNMGRPVRRSSSMRSLDHLRPEGQALNGSSSPGLVS 460
            ..||:|||.|                                          :.|.|        
Zfish   148 KSPCKNGGLC------------------------------------------EDLGG-------- 162

  Fly   461 LGSLQLQQQLAPDFTCDCAAGWTGPTCEINIDECAGGPCEHGGTCIDLIGGFRCECPPEWHGDVC 525
                     .||:.:|.|.||:||..||.|:|:|...|                           
Zfish   163 ---------YAPELSCRCLAGFTGARCETNMDDCLMRP--------------------------- 191

  Fly   526 QVDVNECEAPHSAGIAANALLTTTATAIIGSNLSSTALLAALTSAVASTSLAIGPCINAKECRNQ 590
                                                                             
Zfish   192 ----------------------------------------------------------------- 191

  Fly   591 PGSFACICKEGWGGVTCAENLDDCVGQCRNGATCIDLVNDYRCACASGFKGRDCETDIDECATSP 655
                                       |.|||||:|.||.:.|.|.:||.||.|..::|:||:.|
Zfish   192 ---------------------------CANGATCLDGVNRFSCLCPAGFTGRFCTINLDDCASQP 229

  Fly   656 CRNGGECVDMVGKFNCICPLGYSGSLCE---------EAKENCTPSPCLEGHCLNTPEGYYCHCP 711
            |.|||.|:|.|..|.|:||||::|..||         :|:.|  |:..|:.....||.|      
Zfish   230 CLNGGRCIDRVSNFQCVCPLGFTGRTCELVSPTKSPLKAEHN--PNMTLKPSHWTTPSG------ 286

  Fly   712 PDRAGKHCEQLRPLCSQPPC-NEGCF---ANVSLATSATTTTTTTTTATTTRKMAKPSGLPCSGH 772
                |:  |:|..:..:.|. .||..   ..|.|.....|......||          .|...|:
Zfish   287 ----GE--ERLLKITFRTPAGGEGLSEFQLIVLLVLGGMTLAVVGLTA----------ALVLRGY 335

  Fly   773 GSCEMSDVGTFCKCHVGHTGTFCEHNLNEC 802
                ..|....|:|...|. |..:|:..||
Zfish   336 ----FQDRSASCQCRPAHR-TQRKHSQQEC 360

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
SerNP_524527.3 MNNL 83..238 CDD:462222