DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tl and AT5G41550

DIOPT Version :10

Sequence 1:NP_001262995.1 Gene:Tl / 43222 FlyBaseID:FBgn0262473 Length:1117 Species:Drosophila melanogaster
Sequence 2:NP_198970.1 Gene:AT5G41550 / 834157 AraportID:AT5G41550 Length:1085 Species:Arabidopsis thaliana


Alignment Length:760 Identity:158/760 - (20%)
Similarity:261/760 - (34%) Gaps:244/760 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   159 TRRLTHIPANLL----------TDMRNLSHLELRANIEEMPSHLFDDLENLESIEFGSNKLRQMP 213
            |:.|||: ||:.          .||......::...:...||.   |.|.:..:|....||..: 
plant   140 TKALTHV-ANIKGEHSLNWANEADMIQKIATDVSTKLSVTPSR---DFEGMVGLEAHLTKLNSL- 199

  Fly   214 RGIFGKMPKLKQLNLW----------SNQLHNLTKHDFE----------GATSVLGIDIHD--NG 256
              :..:...:|.:.:|          :..|:|.....|:          ...|::|:|.::  ..
plant   200 --LCFEGDDVKMIGIWGPAGIGKSTIARALYNQLSSSFQLKCFMGNLKGSLKSIVGVDHYEFQKS 262

  Fly   257 IEQLPHDVFAHLTNVTDI---NLSANLFRSLPQG-----LFDHNKHLNEVRLM---------NNR 304
            :::|   :.|.:.|..|:   ||:|  .:...|.     :.|....|.::.::         .:|
plant   263 LQKL---LLAKILNQGDMRVHNLAA--IKEWLQDQRVLIILDDVDDLEQLEVLAKELSWFGSGSR 322

  Fly   305 VPLATLPSRL-------------FANQPE-LQILRLRAELQSLPGDLFEHSTQ-----ITNISLG 350
            :.:||...::             |.:..| |:||.|.|..||...|.||...:     ..|:.||
plant   323 IIVATEDKKILKEHGINDIYHVDFPSMEEALEILCLSAFKQSSVPDGFEELAKKVVHLCGNLPLG 387

  Fly   351 DNLLKTLPATLLEHQVNL------LSLD--------LSNNRLTHLPDSLFAHTTNLTDLRLEDNL 401
            .:::.:......:|:..|      .|||        :...||:....|||.|.....:.|..| .
plant   388 LSIVGSSLRGESKHEWELQLPRIEASLDGKIESILKVGYERLSKKNQSLFLHIACFFNYRSVD-Y 451

  Fly   402 LTGISGDIFSNLGNLVTLVMSRNRLRTIDSRAFV--STNG--LRHLHLDHNDIDLQQPLLDIMLQ 462
            :|.:..|  |||.       .||.|:|:..:.||  |.||  :.|.||      |||....|:|:
plant   452 VTVMLAD--SNLD-------VRNGLKTLADKCFVHISINGWIVMHHHL------LQQLGRQIVLE 501

  Fly   463 TQINSPFGYMHGLLTLNLRNNSIIFVYNDWKNTMLQLRELDLSYN--NISSLGYEDLAFLSQNRL 525
             |.:.|     |.....:....|..|..|...|.   ..:.:|||  ||..:.....||.....|
plant   502 -QSDEP-----GKRQFLIEAEEIRAVLTDETGTG---SVIGISYNTSNIGEVSVSKGAFEGMRNL 557

  Fly   526 HVNMTHNKI----RRIALPEDVHLGEGYNNNLVHVDLNDNPLVCDCTILWFIQLVRGVHKPQYSR 586
            ......|.:    ..:.:|||:.                           ::..:|.:|..:|.|
plant   558 RFLRIFNYLFSGKCTLQIPEDME---------------------------YLPPLRLLHWDRYPR 595

  Fly   587 Q---FKLRTDRLV-----CSQPNVLEGTPVRQIEPQTLICPLDFSDDPRERKCPRGCNCHVRTYD 643
            :   .|.:.:||:     .|....|.|    .|:|...|..:|.|...|.::.|...|       
plant   596 KSLPTKFQPERLLELHMPHSNLEKLWG----GIQPLPNIKSIDLSFSIRLKEIPNLSN------- 649

  Fly   644 KALVINCHSGNLTH---VPRLP----NLHKNMQLMELHLENNTLLRLPSANTPGYESVTSLHLAG 701
               ..|..:.||||   :..||    ||||   |.:|.:.....||:...|.             
plant   650 ---ATNLETLNLTHCKTLVELPSSISNLHK---LKKLKMSGCEKLRVIPTNI------------- 695

  Fly   702 NNLTSIDV------------DQLPTNLTHLDISWNHLQMLNATVLGFLNRTMKW-RSVKLSGNPW 753
             ||.|::|            ..:.:|:..|.:....::....:|.|      .| |..:|     
plant   696 -NLASLEVVRMNYCSRLRRFPDISSNIKTLSVGNTKIENFPPSVAG------SWSRLARL----- 748

  Fly   754 MCDCTAKPLLLFTQDNFERIGDRNEMMCVNAEMPTRMVELSTNDI 798
                              .||.|:..:..:|......:.||.:||
plant   749 ------------------EIGSRSLKILTHAPQSIISLNLSNSDI 775

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TlNP_001262995.1 LRR_8 174..233 CDD:404697 9/68 (13%)
leucine-rich repeat 176..198 CDD:275380 3/21 (14%)
leucine-rich repeat 199..222 CDD:275380 3/22 (14%)
LRR 222..576 CDD:443914 90/435 (21%)
leucine-rich repeat 223..270 CDD:275380 10/68 (15%)
leucine-rich repeat 271..294 CDD:275380 6/30 (20%)
leucine-rich repeat 295..320 CDD:275380 5/46 (11%)
leucine-rich repeat 321..343 CDD:275380 10/21 (48%)
leucine-rich repeat 344..367 CDD:275380 4/22 (18%)
leucine-rich repeat 368..391 CDD:275380 10/36 (28%)
leucine-rich repeat 392..415 CDD:275380 7/22 (32%)
leucine-rich repeat 416..439 CDD:275380 7/24 (29%)
leucine-rich repeat 440..474 CDD:275380 10/33 (30%)
leucine-rich repeat 475..498 CDD:275380 4/22 (18%)
leucine-rich repeat 499..520 CDD:275380 6/22 (27%)
leucine-rich repeat 523..552 CDD:275380 5/32 (16%)
LRRCT 561..619 CDD:214507 13/65 (20%)
LRRNT 631..667 CDD:214470 12/42 (29%)
PPP1R42 <660..752 CDD:455733 22/108 (20%)
leucine-rich repeat 664..693 CDD:275380 8/28 (29%)
leucine-rich repeat 694..715 CDD:275380 4/32 (13%)
leucine-rich repeat 716..737 CDD:275380 3/20 (15%)
LRRCT 751..800 CDD:214507 8/48 (17%)
TIR 858..996 CDD:214587
AT5G41550NP_198970.1 PLN03210 1..900 CDD:215633 158/760 (21%)
leucine-rich repeat 557..584 CDD:275380 5/53 (9%)
leucine-rich repeat 585..606 CDD:275380 5/20 (25%)
leucine-rich repeat 607..629 CDD:275380 6/25 (24%)
leucine-rich repeat 630..652 CDD:275380 6/31 (19%)
leucine-rich repeat 653..676 CDD:275380 8/22 (36%)
leucine-rich repeat 677..699 CDD:275380 7/35 (20%)
leucine-rich repeat 700..720 CDD:275380 1/19 (5%)
leucine-rich repeat 721..744 CDD:275380 4/28 (14%)
leucine-rich repeat 765..787 CDD:275380 4/11 (36%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.