DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tx and Neurog3

DIOPT Version :10

Sequence 1:NP_524516.2 Gene:tx / 43190 FlyBaseID:FBgn0288888 Length:384 Species:Drosophila melanogaster
Sequence 2:NP_067732.1 Gene:Neurog3 / 60329 RGDID:631350 Length:214 Species:Rattus norvegicus


Alignment Length:280 Identity:75/280 - (26%)
Similarity:97/280 - (34%) Gaps:117/280 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 KDSRKRKTASARGEKYSLRQKRQKRGSNEDGESANLADFQLELDPIAEPASKSRKNAPTKSKTKA 88
            :|..:.:....||....||.:|..|         |....:|.|       ||.|::         
  Rat    44 RDCSEAEAGDCRGTSRKLRARRGGR---------NRPKSELAL-------SKQRRS--------- 83

  Fly    89 PPLSKYRRKTANARERTRMREINTAFETLRHCVPEAIKGEDAANTNEKLTKITTLRLAMKYITML 153
                  |||.||.|||.||..:|:|.:.||..:|..  .:||     |||||.|||.|..||..|
  Rat    84 ------RRKKANDRERNRMHNLNSALDALRGVLPTF--PDDA-----KLTKIETLRFAHNYIWAL 135

  Fly   154 TDSIRDPSYESEFIGECLEESANREARVDLEANEEAEVELPVPVAKKPAKTKGSGKKSSAASKRQ 218
            |.::|...:  .|.|.                      |.|||..:  ..:.|.|          
  Rat   136 TQTLRIADH--SFYGP----------------------EPPVPCGE--LGSPGGG---------- 164

  Fly   219 SQKQAKIVPQIPPISSGESCYATSSIGSPASSAYASLSSSSNSHSSSSSPGLELDSLVGLNGISA 283
                          |||:    ..||.||.|.| .|||.::   |....|||::.|         
  Rat   165 --------------SSGD----WGSIYSPVSQA-GSLSPTA---SLEEFPGLQVPS--------- 198

  Fly   284 LDSLLLDTSDGDSLSCLSPG 303
                        |.|||.||
  Rat   199 ------------SPSCLLPG 206

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
txNP_524516.2 bHLH_TS_taxi_Dei 95..157 CDD:381437 30/61 (49%)
Neurog3NP_067732.1 bHLH_TS_NGN3_ATOH5 77..144 CDD:381561 35/95 (37%)

Return to query results.
Submit another query.