DRSC/TRiP Functional Genomics Resources

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Protein Alignment osy and abca3b

DIOPT Version :10

Sequence 1:NP_001034071.1 Gene:osy / 43186 FlyBaseID:FBgn0053970 Length:777 Species:Drosophila melanogaster
Sequence 2:XP_009297489.1 Gene:abca3b / 564344 ZFINID:ZDB-GENE-050517-2 Length:1703 Species:Danio rerio


Alignment Length:900 Identity:190/900 - (21%)
Similarity:350/900 - (38%) Gaps:234/900 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 DLDLAARRRLFISQPSTLATRRQQAVCVRRAHKMYG-SSKNPNVVLDGLNMTVPKGSIYGLLGAS 86
            |.:.|::......:|:.|..    .|.::|..|::. .:|:...|.| |.:.:.:|.|..|||.:
Zfish   507 DAEKASKGEFMEEEPAGLVA----GVKIKRLAKVFKVGNKSKEAVRD-LTLNMFEGQITVLLGHN 566

  Fly    87 GCGKTTLLSCIVGRRRLNSGEIWVLGGRPGSRGSGVPGPRIGYMPQEIALYGEFTMRETLIYFGI 151
            |.||||.||.:.|....:||..:: .|....:...:....:|..||...|:...|:||.|:::..
Zfish   567 GAGKTTTLSMLTGLFPPSSGRAYI-NGYDICQDMALIRRSLGLCPQHDVLFDNLTVREHLLFYTQ 630

  Fly   152 ISAMSKGDIEDRTEFLLKLLNLP---NASKFVKNLSGGQQRRVSLAVALLHEPELLILDEPTVGV 213
            :....:..|....:.::::|||.   ||.  .|.||||.:|::|:.:||:.:.::::|||||.|:
Zfish   631 LKGYPREKIPGEVDRIIRILNLEDKRNAK--CKTLSGGMKRKLSIGIALIGDSKVVMLDEPTSGM 693

  Fly   214 DPVLRQSIWDHLVDITKNGHTTVIITTHYIDECAQAHMIG----LLRGGKMLAEESPDYLRQQYN 274
            ||..|::.|| |:...|.|. |:::|||::||   |.::|    ::..|::....||.:|:.:|.
Zfish   694 DPSARRATWD-LLQGEKRGR-TILLTTHFMDE---ADLLGDRIAIMASGELQCCGSPLFLKNKYG 753

  Fly   275 AD----SLEDVFLKLSVLQNM------GKRRRSSIAQEI-------------------------- 303
            |.    .::|.|..:|.:..:      .....||...|:                          
Zfish   754 AGYHMVIVKDAFCNVSEITRLVHMYVPDATLESSAGAELSYILPKESTSRFELLFAELEMNRDEL 818

  Fly   304 -----------VEQV------------TVPAISNPALDMSDEQH--------AAEISG------- 330
                       :|:|            .:.||..|||....|:.        ::.|||       
Zfish   819 GIASYGASVTTMEEVFLRVGKLVDSSLDIQAIQLPALQYQHERRSHDWTMDDSSSISGMTDVTDF 883

  Fly   331 --------EFGDNISMSSAARDPISTTAPAAPPLPPPQEIPTSFWYNLHVMQSHHLHALIWKNFL 387
                    |.|.||.:::.||                          |::.|   .:|:..|..|
Zfish   884 TDSCTMISEDGSNIKLNTGAR--------------------------LYMQQ---FYAMFLKRAL 919

  Fly   388 WMMRNVGVML--FIVGLPVVQILLFCYA----IGHDPTGLKLAVANHEMSGEMIMEQFCPVHTGC 446
            :..||..||:  |:|.| :..:|....|    ..|....|:||:..:   |:..:......:.|.
Zfish   920 YSWRNWKVMVAQFLVPL-IFTVLALVVARSLPSSHSSPQLRLALKQY---GQTHVPVAVEANAGP 980

  Fly   447 NQTMLSCRYLDMLVKNKSMVVQYVTD--DEMAYEEVRKGRAWAALVIQPNYTASLMERVEDGRYA 509
            ..::|:..|...|....::....:||  :.:.|...|:|.|:                  :....
Zfish   981 LASLLAEIYTTQLPSQNAIAAPNITDFSEYVLYNAQREGGAF------------------NEHCV 1027

  Fly   510 EDGTIESSDLAVRMDWSNQQ-----ISQLLYRDLQYTFFNFVGDMLSDCDVNPKLGR--VPVDFQ 567
            ......|||:   :.:.|.|     .:.|:..|      |.:..:|:..:.:.:.|.  :|.:..
Zfish  1028 VGAAFRSSDV---IGYFNNQGYHTPATALMLVD------NALFKLLAGPNASIQTGNDPMPRNVS 1083

  Fly   568 HPVYGYRNPNFTDFAAPGVILTIIFFLAVAVTSGAMLIDRNEGMLERCL--VAGITGPEILLSQV 630
            .......:.:.|.||   :.:.:::.:|...::.|:|:.....:..:.:  |:|:.......|.:
Zfish  1084 ETAQSQLSESQTGFA---IAINLMYGMASLASTFALLLVSERSVKSKHVQQVSGVYLTNFWFSAL 1145

  Fly   631 VTQFTVMLSQTTFVLIVSFYF---------------FELTLVGNIWLVVALCILNGLCGMSFGFV 680
            :......|.....:|:|...|               |.|.|.|  |.|:.|..|     |||.|.
Zfish  1146 LWDLINFLLPCLLMLVVFRVFSVKAFVAQNHLVDVLFLLLLYG--WAVIPLMYL-----MSFLFS 1203

  Fly   681 ISCAVDT--------ERTATYVAMGSF----LPIVMLCGIIWPIEGMFP---LLQFFTAFL---- 726
            .:....|        ..|||::|:...    |.::.|..::..:..:||   |...||.|.    
Zfish  1204 TAATAYTRLTIFNIISGTATFLAVTIMTIPELNLLHLSHLLDKVFLIFPNYCLGMSFTEFYQNYE 1268

  Fly   727 --------PLTKPTESMRSIL--QRGWGIDNPVVYNGFISISSWVLVFLVLTILL 771
                    ||.|......:|.  ...:.::.|.|....:::|...:||::|..|:
Zfish  1269 MITFCTSSPLAKYICKYYNITYQMNYFSMEEPGVGRFLVALSLQGVVFIILLFLI 1323

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
osyNP_001034071.1 CcmA 50..285 CDD:440746 75/246 (30%)
YadH 578..773 CDD:440604 49/239 (21%)
abca3bXP_009297489.1 rim_protein 1..>95 CDD:130324
rim_protein <122..1695 CDD:130324 190/899 (21%)
Blue background indicates that the domain is not in the aligned region.

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