DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment E(spl)mdelta-HLH and vim.2

DIOPT Version :10

Sequence 1:NP_524503.2 Gene:E(spl)mdelta-HLH / 43150 FlyBaseID:FBgn0002734 Length:173 Species:Drosophila melanogaster
Sequence 2:XP_002941006.1 Gene:vim.2 / 100495820 XenbaseID:XB-GENE-920288 Length:374 Species:Xenopus tropicalis


Alignment Length:135 Identity:32/135 - (23%)
Similarity:55/135 - (40%) Gaps:40/135 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 ELKDLIVDTMDAQG----EQVSKLEKADILELTVN---YLKAQQQQRVANPQSPPPDQVNLDKFR 94
            |||:||......:|    |:.:..|:.||.....:   .|||:.:|             .|.:||
 Frog   113 ELKELIEKLTKEKGMAEIERGNLEEEIDIWNAKCDEELILKAEAEQ-------------TLREFR 164

  Fly    95 AGYTQAAYEVSHIFSTVPGLDLKFGTHLMKQLGHQLKDMKQ--EEEIIDMAEEPVNLADQKRSKS 157
            .....|         |:..|:|:   ..::||..:::.:|:  :||:.|:      |...:.||.
 Frog   165 QDVDDA---------TIQKLELE---RKVEQLIDEIEFLKKLHDEEVADL------LRQIEESKV 211

  Fly   158 PREED 162
            ..|.|
 Frog   212 SAELD 216

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
E(spl)mdelta-HLHNP_524503.2 bHLH-O_ESMB_like 9..77 CDD:381584 14/46 (30%)
ORANGE 91..135 CDD:128787 8/43 (19%)
vim.2XP_002941006.1 Filament 56..367 CDD:459643 32/135 (24%)

Return to query results.
Submit another query.