DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5890 and hpca

DIOPT Version :10

Sequence 1:NP_001356889.1 Gene:CG5890 / 43126 FlyBaseID:FBgn0039380 Length:229 Species:Drosophila melanogaster
Sequence 2:NP_957017.1 Gene:hpca / 393696 ZFINID:ZDB-GENE-040426-1683 Length:193 Species:Danio rerio


Alignment Length:175 Identity:72/175 - (41%)
Similarity:116/175 - (66%) Gaps:0/175 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 PVALEDLCRQTKFTKQEIRVMYRGFKTECPEGVVHEDCFKDIYAKFFPHGNSSLYAHYVFKAFDV 90
            |..|:||...|:||..|::..|:||..:||.|.::.:.||.|||.|||:|::|.:|.:||:.||.
Zfish    10 PEMLQDLRENTEFTDHELQEWYKGFLKDCPSGHLNVEEFKKIYANFFPYGDASKFAEHVFRTFDT 74

  Fly    91 NCNGAISFRDLLVTLSTLLRGSVYERLRWTFKLYDLNGDGRISRGELSEIILAIHELMGRRPHQP 155
            |.:|.|.||:.::.||...||.:.::|:|.|.:|||:|:|.|||.|:.||:.||::::......|
Zfish    75 NNDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISREEMLEIVQAIYKMVSSVMKMP 139

  Fly   156 EDDRKARDQVDRVFRKLDLNQDGIITIEEFLEACLKDDLVTRSLQ 200
            ||:.....:.|::||::|||.||.:::|||::....|..:.|.||
Zfish   140 EDESTPEKRTDKIFRQMDLNNDGKLSLEEFIKGAKSDPSIVRLLQ 184

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5890NP_001356889.1 FRQ1 <80..188 CDD:444056 44/107 (41%)
hpcaNP_957017.1 FRQ1 21..175 CDD:444056 63/153 (41%)

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