DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5890 and ncs-3

DIOPT Version :10

Sequence 1:NP_001356889.1 Gene:CG5890 / 43126 FlyBaseID:FBgn0039380 Length:229 Species:Drosophila melanogaster
Sequence 2:NP_508201.2 Gene:ncs-3 / 186953 WormBaseID:WBGene00003565 Length:199 Species:Caenorhabditis elegans


Alignment Length:173 Identity:64/173 - (36%)
Similarity:109/173 - (63%) Gaps:0/173 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 LEDLCRQTKFTKQEIRVMYRGFKTECPEGVVHEDCFKDIYAKFFPHGNSSLYAHYVFKAFDVNCN 93
            ::.|.:.|.|||:|::..|:.|..:||.|.:..:.|:.||.:|||:|:.|.:|.:||..||.|.:
 Worm    23 VQTLEQVTYFTKKELKKWYKDFVRDCPSGELKMEEFQGIYKQFFPNGDPSKFAAFVFNVFDDNHD 87

  Fly    94 GAISFRDLLVTLSTLLRGSVYERLRWTFKLYDLNGDGRISRGELSEIILAIHELMGRRPHQPEDD 158
            |.|||.:.:..||...||::.|:|.|.|.|||::.||.|::.|:::|:.||:.::|.....|:|:
 Worm    88 GHISFSEFIAALSITSRGTLDEKLDWAFSLYDVDKDGFITKDEMADIVDAIYSMIGNMLELPKDE 152

  Fly   159 RKARDQVDRVFRKLDLNQDGIITIEEFLEACLKDDLVTRSLQM 201
            ...:.:|:::|..:|.|.||.:|.|||.|....|..:.::|.|
 Worm   153 DTPQKRVEKIFTNMDRNLDGQLTREEFKEGSKADPWIVQALTM 195

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5890NP_001356889.1 FRQ1 <80..188 CDD:444056 41/107 (38%)
ncs-3NP_508201.2 FRQ1 32..184 CDD:444056 59/151 (39%)

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