DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Smg6 and EBS1

DIOPT Version :10

Sequence 1:NP_651321.1 Gene:Smg6 / 42994 FlyBaseID:FBgn0039260 Length:948 Species:Drosophila melanogaster
Sequence 2:NP_010492.3 Gene:EBS1 / 851787 SGDID:S000002614 Length:884 Species:Saccharomyces cerevisiae


Alignment Length:704 Identity:121/704 - (17%)
Similarity:241/704 - (34%) Gaps:221/704 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   164 LPHAKN-IVHLYDQLMVLNQ--RNLILINWKNF-CYIHDQLQ-------------------DAFK 205
            ||.|.| |....:.::..||  ::..|:|  .| .::|.:|.                   |:|.
Yeast    11 LPTAFNGIKSQLNSILKSNQLFQDYALLN--GFLAFVHSKLNAAILTSIESQCGKSFAADLDSFD 73

  Fly   206 QLLLEQLKFVCEHKVDVFFWKLLFYNV-------RNYL------KRQQTD-----QAHTHTLLLI 252
            |..:..:       :| |.|:.:.|.:       |||:      |:|||.     :.::..|...
Yeast    74 QSSISSI-------LD-FSWESVHYPIFKWFQMWRNYILFEKENKKQQTKFIDFRKMNSKMLKFF 130

  Fly   253 EQAIKFY----RMLYDK-----LMAKCV-------------------------ASSRCDSALKVV 283
            :....||    ..:|.|     |:.|.:                         :||.....:..:
Yeast   131 KTVQNFYVNVINTVYKKYDISVLLPKRIIQDLKLSDIENTTNVGDILAVKTFNSSSPLAHLIPTL 195

  Fly   284 AQRLLICLGDLTRYRV------NHVKATDYMEAARYYQRAQELVPGNGAPFNQLAVISIYHHKRF 342
            ..|.|:.||...||:.      |....:::.::..:::.|..::|..|..::|...|.:......
Yeast   196 FHRCLLFLGTAYRYKTLLEEISNKYSISNFKKSLDFFRLASLVLPSAGETYSQAGAIFLQTGNLG 260

  Fly   343 DAVYYYVRSLLTSN----SIQSAKESLLDLFDEIRRKYEETEMKQSPMHYAAGSKNQKSKQMRKE 403
            .||:.:|:.::|..    ||::....::|....:.|....|.|..    |...||..::      
Yeast   261 IAVFNFVKGMMTKMPSPVSIKNFGALMVDNKSSLNRSLHTTIMNT----YLQESKGPRT------ 315

  Fly   404 VWIYPDGIRRLHRTDDKGNKAKGNKATMAEVNRYEEMPPEEILPRIVSLYLYLLGKLYTGTD-VD 467
                                                 |.:|||.   ..:|.|.|.:::.|. .|
Yeast   316 -------------------------------------PAKEILE---FYFLGLFGSVWSPTSWRD 340

  Fly   468 SLYPLLRKLQIQIGVALRH-ENLLSRSKLLKIVALNLFVVEHNKPKTSRREMRYHSFNFANSFFG 531
            ...|    .|:..|:.||| ||.|..:...:.:         |..||.     :|:.......|.
Yeast   341 DTKP----NQLNNGIKLRHLENALYETMSARYL---------NNIKTI-----FHNLIITIGGFH 387

  Fly   532 LMMKKTNQLLAGFVEDSTNVQCLPEEDFATVNTYLQFVNVYVRWL--SISLDVW--EPVRSE--- 589
            |::|:.:.:.|..::|..:.:.          .||.|...|:..:  .|..:.|  .|..||   
Yeast   388 LLLKRRSDVSAKTLKDLRSNEL----------DYLNFAFKYIAHILNDIVKESWSENPEVSEILG 442

  Fly   590 EHSFIDCWAELTIL--------FEYIECL-----------------MGKHKLEKNEILLDEDVAL 629
            ....|:||.:...:        .|::..|                 :.:| :.|.....:||:.:
Yeast   443 MVRIINCWIKANPMVLQYSQSNLEFVNALAYLINDIVKKKPSPSFSITEH-IPKRTYWFEEDLMV 506

  Fly   630 RGFTPLGRETLSMDYLKRGSERLQFFERVRRIGQFQEYYVQHQEALQQPLESSFTVEHLNAAMKN 694
            :|.:.:..:....|          .:|::..:....:..:.:.....:...||..:..|.|.:..
Yeast   507 KGLSFVNFQLSDFD----------DYEKILEMDHSLDRLIGNPPLCDKLSASSEMLLRLQAVVNI 561

  Fly   695 ALENYDAESCGLAANVSKIQCKAVEELLCRSTDSDVSELCKLKKELEAKARVKQ 748
            :.:.....:||:..:.:|.:....:::..:.|   |....|..|:...||::::
Yeast   562 SSQLLQNNNCGVEWSDNKSRYIFNKKIGFKET---VKNSMKTSKQSNEKAKLQR 612

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smg6NP_651321.1 EST1 219..298 CDD:463062 25/130 (19%)
EST1_DNA_bind 310..639 CDD:431239 64/366 (17%)
PIN_Smg6-like 767..941 CDD:350233
EBS1NP_010492.3 EST1 79..214 CDD:463062 26/142 (18%)
EST1_DNA_bind 228..516 CDD:431239 64/366 (17%)
Blue background indicates that the domain is not in the aligned region.

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