DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smg6 and est1

DIOPT Version :10

Sequence 1:NP_651321.1 Gene:Smg6 / 42994 FlyBaseID:FBgn0039260 Length:948 Species:Drosophila melanogaster
Sequence 2:NP_596232.1 Gene:est1 / 2540492 PomBaseID:SPBC2D10.13 Length:490 Species:Schizosaccharomyces pombe


Alignment Length:249 Identity:53/249 - (21%)
Similarity:85/249 - (34%) Gaps:80/249 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   151 TTEHPD--WFEPLLGLPHAKNIVHLYDQLMVLNQRNLILINWKNFCYIHDQLQDAFKQLLLEQLK 213
            |.|.||  |     ...|.|.|.|...:...::.|::                            
pombe    59 TFERPDIIW-----SCCHYKIIQHFRSRFREIHPRHV---------------------------- 90

  Fly   214 FVCEHKVDVFFWKLL-----FYN--VRNYLKRQQTDQAHTHTLLLIEQAIKFYRMLYDKLMAKCV 271
             |.:.|....|:|.|     ||.  :...:.:.|.|.               ||..:.|..:...
pombe    91 -VEKKKTKKVFFKFLKTCAIFYQTCISELISKFQLDS---------------YRPFFCKWTSSAT 139

  Fly   272 ASSRCDS-----------------ALKVVAQRLLICLGDLTRYRVNHVKATD-YMEAARYYQRAQ 318
            .||...:                 ||:.| ....|.|||:.||....:|... |..|..:|..|.
pombe   140 VSSTISNDEMSSIPEASYSRNHMEALECV-YNCFIYLGDMARYSSTCLKKRGAYDRALGFYDLAH 203

  Fly   319 ELVPGNGAPFNQLAVISIYHHKRFDAVYYYVRSLLTSNSIQSAKESLLDLFDEI 372
            ..:||||...||:||:........:::|::..:|.:.:..:||   ||:|..::
pombe   204 RTLPGNGMHRNQIAVVWASDECIVESIYWFSSALCSEDPPKSA---LLNLLKQL 254

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smg6NP_651321.1 EST1 219..298 CDD:463062 21/102 (21%)
EST1_DNA_bind 310..639 CDD:431239 18/63 (29%)
PIN_Smg6-like 767..941 CDD:350233
est1NP_596232.1 EST1 64..185 CDD:463062 30/170 (18%)
EST1_DNA_bind 195..450 CDD:431239 18/63 (29%)
Blue background indicates that the domain is not in the aligned region.

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