DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha1 and lgc-28

DIOPT Version :10

Sequence 1:NP_001262916.1 Gene:nAChRalpha1 / 42918 FlyBaseID:FBgn0000036 Length:597 Species:Drosophila melanogaster
Sequence 2:NP_001022053.1 Gene:lgc-28 / 3565225 WormBaseID:WBGene00044301 Length:397 Species:Caenorhabditis elegans


Alignment Length:386 Identity:72/386 - (18%)
Similarity:140/386 - (36%) Gaps:99/386 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 DAKRLYDDLL----SNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVWVEQEWNDY 84
            |..:.:||.:    ..|.:|| |:            |.:..:.|:..:..::...:.....|.|.
 Worm    39 DITKRFDDTMPIKKDGYLQLI-PL------------LHVDHIHDIQDEQGVLKMALTFTFTWMDE 90

  Fly    85 KLKWNPDDYGGVDTLHVPSEHI-----WLPDIVLYNNADG----------NYEVTIMTKAILHHT 134
            :|.|||.:|.|:.|.......:     |.|.:::.:..:.          :.::.|.:..::..:
 Worm    91 RLMWNPSNYSGIRTFSTTRHEMWRKKFWTPTLMMTDVPNSRRPSDVFKPFDMDIYISSSGMVRTS 155

  Fly   135 GKVVWKPPAIYKSFCEIDVEYFPFDEQTCF-----------MKFGSWTYDGYMVDLRHLKQTADS 188
            .:::...|      |......:|.|.:.|.           .:|..|   |.....|:|..:..:
 Worm   156 ARMMLTIP------CRTGFGSYPNDYKNCTFTLMSPYYADQFRFAQW---GGAEFTRYLMSSRVT 211

  Fly   189 DNIE---VGIDLQDYYI----SVEWDIMRVPAVRNEKFYSCCEEPYLDIVFNLTLRRKTLFYTVN 246
            |.::   :.||.::||:    .|..|..:........||.          :||.|:|...|.:|.
 Worm   212 DVLDFQLINIDTRNYYMFLGSEVVDDFSKFKPRHCRSFYR----------YNLVLKRVNKFVSVQ 266

  Fly   247 LIIPCVGISFLSVLVFYLPSDSGEKISLCI-SILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFT 310
            ||.|...|:....:..:||...|   .:|. |.|:..|:|...:.:::|.....:|::.  :|..
 Worm   267 LIAPISVIAVFLAISGFLPHFYG---LVCAGSALVYETIFTYDVEQVLPKDYSGMPMIA--ILLC 326

  Fly   311 MMLVTLSVVVTIAVLNVNFRSPVTHRMAP-------------------WVQR-----LFIQ 347
            .:.....|::...|.::|.||.......|                   ||.:     ||:|
 Worm   327 FLFAETIVLLAWKVFSINTRSHTVFTAFPEYFDDEITSKKEKLLKFVIWVDKFLMVALFVQ 387

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha1NP_001262916.1 LGIC_ECD_nAChR_proto_alpha-like 24..242 CDD:349832 44/254 (17%)
LIC 27..530 CDD:455710 71/383 (19%)
Cys-loop 149..163 CDD:349832 3/13 (23%)
lgc-28NP_001022053.1 LGIC_ECD 62..>187 CDD:475126 19/130 (15%)
LIC 67..>329 CDD:455710 53/285 (19%)

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