DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRalpha1 and LOC1268935

DIOPT Version :10

Sequence 1:NP_001262916.1 Gene:nAChRalpha1 / 42918 FlyBaseID:FBgn0000036 Length:597 Species:Drosophila melanogaster
Sequence 2:XP_307512.4 Gene:LOC1268935 / 1268935 VectorBaseID:AGAMI1_005560 Length:424 Species:Anopheles gambiae


Alignment Length:384 Identity:80/384 - (20%)
Similarity:150/384 - (39%) Gaps:76/384 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SVLFAAVFIALHFATGGLANPDAKR------LYDDLLSN-YNRLIRPVGNNSDRLTVKMGLRLSQ 60
            |.::..:.:|..|.:....|.|.||      :...|..| |:..|||..:..|.:.:.....|..
Mosquito     6 SFIYLPLLVAFLFDSASSINCDKKRDNVQYTIKQHLFCNGYDPKIRPAKSEFDSINITTYAVLYS 70

  Fly    61 LIDVNLKNQIMTTNVWVEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNADGNYE--- 122
             .|::....:|:..|.....|.|..|.||..|:..:.||::.::.||.|.   :.|.:.:||   
Mosquito    71 -FDISEYRSVMSFQVNYYMRWQDSSLAWNASDWSNITTLNINNDEIWSPQ---FENINSDYEGQP 131

  Fly   123 -VTIMT-KAILHHTGKVVWKPPAIYKSFCEIDVEYFPFDEQTCFMKFGSWTYD-----------G 174
             |:.:. ..:|...|.|...|.....:.|..|...:||:...|.|.|.:...:           .
Mosquito   132 SVSCLNPDCLLRVNGYVSCSPVCRISAKCSSDYSRWPFNTLVCRMWFTNRDKELVDEVNFLPVIT 196

  Fly   175 YMVDLRHLKQTADSDNIEVGIDLQDYYISVEWDIMRVPAVRNE-KFYSCCEEPYLDIVFNLTLRR 238
            |:...|||..|                   :|.:..:.:.:.: ...........::.|||.   
Mosquito   197 YLPSNRHLPTT-------------------KWCVTSISSNKTQLSIPGATSRTVEELEFNLE--- 239

  Fly   239 KTLFYTVNLII-----PCVGISFLSVLVFYLPSDSGEKISLCISILLSLTVFFLLLAEIIPPTSL 298
                ::.:|||     |...:|.|::.|..|.|...|||   :..|:.:...|.||.::..||. 
Mosquito   240 ----HSPHLIIAIIYLPAFALSMLNIFVCLLDSRVKEKI---VIPLICMIFHFQLLQQMSNPTP- 296

  Fly   299 TVPLLGKYLLFTMMLVTLSVVVTIA-------------VLNVNFRSPVTHRMAPWVQRL 344
            .:|.:..:::.:|:|..|..|.|:.             ::..:.|:.:::|:..|:.::
Mosquito   297 EIPGVVLFIIASMILTFLLFVSTLINRWLHGLQSTPPNIVIRSMRAILSNRLMNWILKV 355

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRalpha1NP_001262916.1 LGIC_ECD_nAChR_proto_alpha-like 24..242 CDD:349832 49/241 (20%)
LIC 27..530 CDD:455710 74/360 (21%)
Cys-loop 149..163 CDD:349832 4/13 (31%)
LOC1268935XP_307512.4 None

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