DRSC/TRiP Functional Genomics Resources

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Protein Alignment twin and cnot6b

DIOPT Version :10

Sequence 1:NP_732964.1 Gene:twin / 42880 FlyBaseID:FBgn0011725 Length:567 Species:Drosophila melanogaster
Sequence 2:NP_001103498.1 Gene:cnot6b / 560386 ZFINID:ZDB-GENE-071004-97 Length:558 Species:Danio rerio


Alignment Length:547 Identity:306/547 - (55%)
Similarity:395/547 - (72%) Gaps:29/547 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 KDKYDSA-NRRQQIFLSQEDIAAGKKTNWSGLEITGCVRNISPSLWEFEHLTALYLNDNQLLRLP 90
            |:|||.. :||....:|.|:..:|||:.|.||||||.||::|..||...|||||:|:||.|.|:|
Zfish     3 KEKYDPPDSRRMYTIMSSEEANSGKKSIWDGLEITGNVRSLSSGLWSLTHLTALHLSDNCLSRIP 67

  Fly    91 ADVGMLTSLRTLDLSSNKLRSLPAELGELIQLRELLLNNNFLRVLPYEIGKLFHLVILGLMGNPL 155
            .::..|.:|..||||||::||||||||.::.|||||||||.|||||:|:||||.|..|||.||||
Zfish    68 PEIAKLHNLAFLDLSSNRIRSLPAELGNMVSLRELLLNNNQLRVLPFELGKLFQLQTLGLKGNPL 132

  Fly   156 QKEFMNIYNEPNGTQKLLTYMLDNLSFTV-----NPPPQRPWLPLAKPNKTRPACIFTVMCYNVL 215
            .:|.|::|.||:||::||.|:||||:..:     ..||.|.|:.|.:|.::||..:.||||||||
Zfish   133 TQEIMSLYQEPDGTRRLLNYLLDNLAGAIKRIPTEQPPPRSWIVLQEPERSRPTALLTVMCYNVL 197

  Fly   216 CDKYATRQMYGYCPSWALCWEYRKKSIIDEIRHYAADIISLQEIETEQFYHFFLPELKNDGYEGI 280
            ||||||||:|||||||||.|.||||||:.||.:..||||||||:||||::.|||.||...||:|.
Zfish   198 CDKYATRQLYGYCPSWALNWSYRKKSIMQEILNCNADIISLQEVETEQYFDFFLLELSKQGYDGF 262

  Fly   281 FSPKSRAKTMSELERKYVDGCAIFFRASKFTLIKESLIEFNQLAMANAEGSDNMLNRVMPKDNIG 345
            |||||||:||||.:||:|||||||::..||.::::..:|||||||||:|||:.||||||.|||||
Zfish   263 FSPKSRARTMSESDRKHVDGCAIFYKTEKFNVVQKHTVEFNQLAMANSEGSEAMLNRVMTKDNIG 327

  Fly   346 LAALLKVKENAWE--------PMSEVTQISQPLLVCTAHIHWDPEFCDVKLIQTMMLSNELKTII 402
            :|.||::|:...|        ||.:     |.|||..||:|||||:.||||:||||..:|:|.||
Zfish   328 VAVLLELKKELIEVSSGKSIHPMEK-----QLLLVANAHMHWDPEYSDVKLVQTMMFLSEVKNII 387

  Fly   403 DEASHSFRPGHKN---DSNAVQLLLCGDFNSLPDSGVVEFLGKGRVSMDHLDFKDMGYKSCLQRL 464
            |:||.|.:  |.:   :::::.|:||.|.||||||||||:|..|.|...|.|||::.|...|...
Zfish   388 DKASRSLK--HSSVSGETSSIPLVLCADLNSLPDSGVVEYLSTGGVDCTHKDFKELRYSDSLTNF 450

  Fly   465 LSNDTN-----EFTHSFKLASAYNEDIMPHTNYTFDFKGIIDYIFYTKTGMVPLGLLGPVSNDWL 524
            ..|..|     ..||:|||.|||...:||:|||||||:|:||||||::..:..||:|||:..:||
Zfish   451 NCNGKNSTSNGRITHAFKLKSAYENGLMPYTNYTFDFRGVIDYIFYSRPQLNVLGVLGPLDTNWL 515

  Fly   525 RENKVVGCPHPHIPSDHFPLLVELELM 551
            .||.:.|||||.||||||.|..:|||:
Zfish   516 LENNISGCPHPLIPSDHFSLFAQLELV 542

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
twinNP_732964.1 LRR <52..>155 CDD:443914 64/102 (63%)
leucine-rich repeat 76..98 CDD:275378 11/21 (52%)
leucine-rich repeat 99..121 CDD:275378 15/21 (71%)
leucine-rich repeat 122..144 CDD:275378 18/21 (86%)
leucine-rich repeat 145..156 CDD:275378 7/10 (70%)
Deadenylase_CCR4 209..550 CDD:197331 204/356 (57%)
cnot6bNP_001103498.1 LRR <34..>133 CDD:443914 63/98 (64%)
leucine-rich repeat 53..75 CDD:275378 11/21 (52%)
leucine-rich repeat 76..98 CDD:275378 15/21 (71%)
leucine-rich repeat 99..121 CDD:275378 18/21 (86%)
leucine-rich repeat 122..133 CDD:275378 7/10 (70%)
Deadenylase_CCR4a 191..541 CDD:197340 204/356 (57%)

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