DRSC/TRiP Functional Genomics Resources

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Protein Alignment: CHORD and Chordc1

Sequence 1:NP_651226.1 Gene:CHORD FlyBaseID:FBgn0029503 Length:354 Species:Drosophila melanogaster
Sequence 2:NP_001101598.1 Gene:Chordc1 RGDID:1304679 Length:331 Species:Rattus norvegicus

Alignment Length:333 Identity:143/334 (43%)
Similarity:213/334 (64%) Gaps:26/334 (8%)


  Fly     4 CYNRGCGQLFDPQTNNDESCRHHPGEPFFHDAYKGWSCCNKKSVDFTEFLNIKGCTLAKHSNVKP 68
            ||||||||.|||:.|.|::|.:|||.|.||||.||||||.:::.||::||:|.|||..:|::.||
  Rat     5 CYNRGCGQRFDPEANADDACTYHPGVPVFHDALKGWSCCKRRTTDFSDFLSIVGCTKGRHNSEKP 69

  Fly    69 PEPEKPVKDESDKDEVIEVRAPIR----------EALPRPPIDSPLTVIQPTVAPALKDMVFAVK 123
            |||.||....::|.|:.|::...:          ||:.||..|.|:|.::..::.:||..:..:|
  Rat    70 PEPVKPEVKTTEKKELSELKPKFQEHIIQAPKPVEAIKRPSPDEPMTNLELKISASLKQALDKLK 134

  Fly   124 TPAA------QKSSDAIEVGTTCKNNGCTYSFTGNSSDFGECTYHPGVPIFHEGMKFWSCCQKRT 182
            ..:.      ::.||.|::||:|||.||:.::.|..|....|.||.||||||||||:||||:::|
  Rat   135 LSSGNEEDKKEEDSDEIKIGTSCKNGGCSKTYQGLQSLEEVCVYHSGVPIFHEGMKYWSCCRRKT 199

  Fly   183 SDFSQFMAQKGCTYGEHKWVKENDDKKVVQCRYDWHQTATNVVMAIYAKKYDYSQSVIELNPIRL 247
            |||:.|:||:|||.|:|.|.|::..||||.||:|||||...|.:::|||......|.:|.|...|
  Rat   200 SDFNTFLAQEGCTRGKHVWTKKDAGKKVVPCRHDWHQTGGEVTISVYAKNSLPELSQVEANSTLL 264

  Fly   248 HVNLVFPEQDNARFDLDLELRGIVNVSNASAHMYGTKVEIKLPKLEPGSWSNLNFPNKKLPVVKK 312
            :|::||  :....|..:::|.|:::|..:...|..||:||.:.|.||..|::|     :||..||
  Rat   265 NVHIVF--EGEKEFHQNVKLWGVIDVKRSYVTMTATKIEITMRKAEPMQWASL-----ELPTTKK 322

  Fly   313 SQVEEKKK 320
               :||:|
  Rat   323 ---QEKQK 327

Known Domains:


GeneSequenceDomainRegion External IDIdentity
CHORDNP_651226.1 CHORD 3..63 CDD:282781 36/59 (61%)
CHORD 138..199 CDD:282781 36/61 (59%)
p23_melusin_like 213..301 CDD:107238 32/88 (36%)
Chordc1NP_001101598.1 Interaction with PPP5C. {ECO:0000250} 2..77 44/72 (61%)
CHORD 3..64 CDD:282781 36/59 (61%)
Interaction with HSP90AA1 and HSP90AB1. {ECO:0000250} 65..316 99/258 (38%)
CHORD 155..216 CDD:282781 36/61 (59%)
p23_melusin_like 230..316 CDD:107238 32/93 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 1 0.900 E1_KOG1667
Hieranoid 1 1.000
Homologene 1 1.000 H8111
Inparanoid 1 1.050 300 1.000 Inparanoid score I2561
OMA 1 1.010
OrthoDB 1 1.010 D1163528at2759
OrthoFinder 1 1.000 FOG0002103
OrthoInspector 1 1.000 T618594
orthoMCL 1 0.900 OOG5_129434
Panther 1 1.100 LDO PTHR12621
Phylome 1 0.910 0.800 Consistency score
TreeFam 1 0.960
1211.840

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