DRSC/TRiP Functional Genomics Resources

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Protein Alignment: CHORD and git7

Sequence 1:NP_651226.1 Gene:CHORD FlyBaseID:FBgn0029503 Length:354 Species:Drosophila melanogaster
Sequence 2:NP_595340.1 Gene:git7 PomBaseID:SPBC36.12c Length:379 Species:Schizosaccharomyces pombe

Alignment Length:167 Identity:43/168 (26%)
Similarity:78/168 (46%) Gaps:18/168 (11%)


  Fly   202 VKENDDKKVVQCRYDWHQTATNVVMAIYAKKY-DYSQSVI-ELNPIRLHVNLVFPEQDNARFDLD 264
            :::|::|...:.||||.||:.::.:.|||||. |...|:: |.|.:::.:.|    :|.:.|.|.
pombe   173 IEKNEEKLSNRIRYDWSQTSFSLNIDIYAKKVKDEDVSLLMEKNTLKIEIKL----EDGSIFSLV 233

  Fly   265 LE-LRGIVNVSNASAHMYGTKVEIKL-PKLEPGSWSNL--NFPNKKLPVVKK--------SQVEE 317
            |: |...:....:|..::.:||||.| .|:....|..|  :..|..:.|..|        ...:.
pombe   234 LDPLYEEIVPEKSSFKLFSSKVEITLIKKVSEIKWEALVKSPANNSVNVYAKDSNHSSASGNTKN 298

  Fly   318 KKKQEESDEEFFDLDDIKAETSFRLSEMSMQSPNNLD 354
            |.|..:|..:..||::.:......|:.:......|.|
pombe   299 KAKDWDSLAKLADLEEDEPTGEAALANLFQNLYKNAD 335

Known Domains:


GeneSequenceDomainRegion External IDIdentity
CHORDNP_651226.1 CHORD 3..63 CDD:282781
CHORD 138..199 CDD:282781
p23_melusin_like 213..301 CDD:107238 30/94 (32%)
git7NP_595340.1 SGT1 1..379 CDD:227422 43/168 (26%)
p23_CS_SGT1_like 187..271 CDD:107223 27/88 (31%)
SGS 301..379 CDD:282811 7/36 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 0.750 Consistency score
RoundUp 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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