DRSC/TRiP Functional Genomics Resources

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Protein Alignment SdhD and Sdhd

DIOPT Version :10

Sequence 1:NP_651181.1 Gene:SdhD / 42808 FlyBaseID:FBgn0039112 Length:182 Species:Drosophila melanogaster
Sequence 2:NP_942083.1 Gene:Sdhd / 363061 RGDID:735231 Length:159 Species:Rattus norvegicus


Alignment Length:175 Identity:56/175 - (32%)
Similarity:86/175 - (49%) Gaps:19/175 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 LSLLLRGAVRCNAANLVKSARITPLKSYSTLVANVQRKAVVQPLAVAKIVAPVVR---EISVSAP 64
            :::||:..|.|:.    :.||...|:|.:...|.|......||       .|..|   .|.:| |
  Rat     1 MAVLLKLGVLCSG----QGARALSLRSRAVRPAFVSAFLQDQP-------TPGWRGTQHIHLS-P 53

  Fly    65 RMASAGSSHTLLWTVERIVSAGLLAVIPAAFIAPSQVLDALMAISVVIHTHWGVEAMVVDYMRPS 129
            ...|...:.:|.||.||:||..||.:|||.::.|..|:|..:|.::.:|:|||:..:|.||    
  Rat    54 SHQSGSKAASLHWTSERVVSVLLLGLIPAGYLNPCSVVDYSLAAALTLHSHWGIGQVVTDY---- 114

  Fly   130 VVGNVLPKVAHIALIIISVATLGGLFYFIQNDVGLANGIKRFWAI 174
            |.|:.|.|.....|:.:|..|..||.||..:|||:...:...|.:
  Rat   115 VHGDALQKATKAGLLAVSALTFAGLCYFNYHDVGICRAVAMLWKL 159

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SdhDNP_651181.1 CybS 45..173 CDD:461624 44/130 (34%)
SdhdNP_942083.1 SQR_TypeC_CybS 60..158 CDD:239576 37/101 (37%)

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