DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG17121 and rdh10b

DIOPT Version :9

Sequence 1:NP_651114.1 Gene:CG17121 / 42721 FlyBaseID:FBgn0039043 Length:361 Species:Drosophila melanogaster
Sequence 2:NP_958488.1 Gene:rdh10b / 378722 ZFINID:ZDB-GENE-030909-7 Length:336 Species:Danio rerio


Alignment Length:313 Identity:91/313 - (29%)
Similarity:146/313 - (46%) Gaps:51/313 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 LKVIVFLLLLPLVLLAV--FLKHLLDYLFALGLKEKDVSGKVALVTGGGSGLGREICLELARRGC 117
            |.|:.|.::...||...  |::.          :||.|.|:|.::||.||||||...||.|||..
Zfish     7 LFVVTFKIIWSFVLAGAKWFIRP----------REKSVEGQVCVITGAGSGLGRLFALEFARRRA 61

  Fly   118 KLAVVDVNSKGCYETVELLSKIPRCVAKA-------------------YKNDVSSPRELQLMAAK 163
            .|.:.|:|.:...||.|:..:|.|.:..:                   |..|||....:.|.|.|
Zfish    62 TLVLWDINRQSNEETAEMAREIYRQLKPSTGSSDRVQELPLLQPKVYTYMCDVSKRESVYLTAEK 126

  Fly   164 VEKELGPVDILVNNASLMPMTSTPSLKSDEIDTILQLNLGSYIMTTKEFLPKMINRKSGHLVAVN 228
            |..|:|.:|:|:|||.::..........:.|:..:.:|..::..|||.|||||:....||:|.|.
Zfish   127 VRSEVGDIDLLINNAGVVSGRHLLDCPDELIERTMMVNCHAHFWTTKAFLPKMLELNHGHIVTVA 191

  Fly   229 ALAGLVPLPGAGIYTATKYGIEGFMESLRAELRLSDCDYVRTTVANAYLMRTSGDLPLLSDAG-- 291
            :..||....|...|.|:|:|..||.|||..||:.:|.|.::.|:.          .|.|.|.|  
Zfish   192 SSLGLFTTAGVEDYCASKFGAIGFHESLSHELKAADKDGIKMTLV----------CPFLVDTGMF 246

  Fly   292 --------IAKSYPGLPTPYVAEKIVKGVLLNERMVYVPKIFALSVWLLRLLP 336
                    :|..:|.|...|..::.::.:|.::.|:..|::..:..::..:||
Zfish   247 EGCKIRKEMAPFFPPLKPEYCVKQAMRAILTDQPMICTPRVMYMVTFMKTVLP 299

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17121NP_651114.1 DltE 91..349 CDD:223377 82/275 (30%)
NADB_Rossmann 94..338 CDD:304358 81/272 (30%)
rdh10bNP_958488.1 DltE 36..309 CDD:223377 82/274 (30%)
17beta-HSDXI-like_SDR_c 38..302 CDD:187598 81/272 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1373099at2759
OrthoFinder 1 1.000 - - FOG0000227
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24322
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
44.020

Return to query results.
Submit another query.