DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG17121 and rdh10b

DIOPT Version :10

Sequence 1:NP_651114.1 Gene:CG17121 / 42721 FlyBaseID:FBgn0039043 Length:361 Species:Drosophila melanogaster
Sequence 2:NP_958488.1 Gene:rdh10b / 378722 ZFINID:ZDB-GENE-030909-7 Length:336 Species:Danio rerio


Alignment Length:313 Identity:91/313 - (29%)
Similarity:146/313 - (46%) Gaps:51/313 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 LKVIVFLLLLPLVLLAV--FLKHLLDYLFALGLKEKDVSGKVALVTGGGSGLGREICLELARRGC 117
            |.|:.|.::...||...  |::.          :||.|.|:|.::||.||||||...||.|||..
Zfish     7 LFVVTFKIIWSFVLAGAKWFIRP----------REKSVEGQVCVITGAGSGLGRLFALEFARRRA 61

  Fly   118 KLAVVDVNSKGCYETVELLSKIPRCVAKA-------------------YKNDVSSPRELQLMAAK 163
            .|.:.|:|.:...||.|:..:|.|.:..:                   |..|||....:.|.|.|
Zfish    62 TLVLWDINRQSNEETAEMAREIYRQLKPSTGSSDRVQELPLLQPKVYTYMCDVSKRESVYLTAEK 126

  Fly   164 VEKELGPVDILVNNASLMPMTSTPSLKSDEIDTILQLNLGSYIMTTKEFLPKMINRKSGHLVAVN 228
            |..|:|.:|:|:|||.::..........:.|:..:.:|..::..|||.|||||:....||:|.|.
Zfish   127 VRSEVGDIDLLINNAGVVSGRHLLDCPDELIERTMMVNCHAHFWTTKAFLPKMLELNHGHIVTVA 191

  Fly   229 ALAGLVPLPGAGIYTATKYGIEGFMESLRAELRLSDCDYVRTTVANAYLMRTSGDLPLLSDAG-- 291
            :..||....|...|.|:|:|..||.|||..||:.:|.|.::.|:.          .|.|.|.|  
Zfish   192 SSLGLFTTAGVEDYCASKFGAIGFHESLSHELKAADKDGIKMTLV----------CPFLVDTGMF 246

  Fly   292 --------IAKSYPGLPTPYVAEKIVKGVLLNERMVYVPKIFALSVWLLRLLP 336
                    :|..:|.|...|..::.::.:|.::.|:..|::..:..::..:||
Zfish   247 EGCKIRKEMAPFFPPLKPEYCVKQAMRAILTDQPMICTPRVMYMVTFMKTVLP 299

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17121NP_651114.1 Rossmann-fold NAD(P)(+)-binding proteins 94..338 CDD:473865 81/272 (30%)
rdh10bNP_958488.1 17beta-HSDXI-like_SDR_c 38..302 CDD:187598 81/272 (30%)

Return to query results.
Submit another query.