DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RNF220 and rnf220b

DIOPT Version :10

Sequence 1:NP_651088.1 Gene:RNF220 / 42690 FlyBaseID:FBgn0039013 Length:398 Species:Drosophila melanogaster
Sequence 2:XP_073766294.1 Gene:rnf220b / 558091 ZFINID:ZDB-GENE-081104-195 Length:684 Species:Danio rerio


Alignment Length:417 Identity:136/417 - (32%)
Similarity:192/417 - (46%) Gaps:92/417 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 ICPTCDVKIKRSQVADHCQVEMERL---HNP--------ISAVTPPTPTSGATASEESGSVSGGR 78
            :||.|...::..::.:|.:.|||||   ||.        :||..|.:..|.....|.|.|.|..|
Zfish   317 MCPICHAVLRSGELQEHMEQEMERLMQMHNSQGPAQKECLSAGPPKSLFSMHIKREGSSSASSPR 381

  Fly    79 --------QPWSVFQRVQRNRQARQRQR----TRKRPASPAPPATVNPTVAAAPPPAAATPSVAA 131
                    ..:..|.||:.|||.|...:    .|...........|.|....   |.|       
Zfish   382 PADEAVHSDRYQTFLRVRSNRQTRLNVKELCWCRCYAKHKVKSGHVWPDCGF---PHA------- 436

  Fly   132 AESSQPTCPVCNHNFPQSNIQEHVNHCLRQSRRNGQANGERHSSEDSEDSEEYEEYEWAGQKRIR 196
                 |:||:      .:.|.:.......:.:|:|..     ..||........|:|||.|:||:
Zfish   437 -----PSCPL------SARIGKLKRRKAEEEQRDGMC-----VVEDGSVISAGREFEWAEQRRIQ 485

  Fly   197 VSTLVQGGYSALGLGQRIKYNGSQQAQDDEDEDLNVDEDDTHIYGPTQYGEGDVIP-LVNE--DT 258
            :.::::|   ..||     .:.:.:...|.|.||:||.|||..||..||.|.|||| |.||  |.
Zfish   486 MVSVLRG---FRGL-----VSSTLKEHQDSDADLDVDGDDTLEYGKVQYTEADVIPCLGNEARDA 542

  Fly   259 E------GNVSEADVTSYV----RRLISS-----SDGPKPNHSSEATEQEPASTSNVEAPPASEE 308
            |      |.:...|.||..    .:|.:|     |:|...|:.|..:   |.:..|.|....|::
Zfish   543 EERQALRGAILNGDTTSRFSPEQTKLANSETPTTSNGEGDNNLSTTS---PRTCKNSELEILSDD 604

  Fly   309 PSTSRSTRSTSQNQQQIIESLKAKLRLYEKQ-AQG-KYKCLICIDDYKNPAISVSCWHVHCEQCW 371
            ||.:            .:|:||.::|..||| .:| ::|||||:|.|..|..|:.|||||||:||
Zfish   605 PSLN------------TLEALKTRIRDLEKQLTRGDRFKCLICMDCYTVPLTSIQCWHVHCEECW 657

  Fly   372 LQTLGARKLCPQCNSITTPKDLRRIYL 398
            |:||||:|||||||:||:|.||||:||
Zfish   658 LRTLGAKKLCPQCNTITSPGDLRRVYL 684

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RNF220NP_651088.1 RNF220 22..281 CDD:464946 80/296 (27%)
RING-HC_RNF220 344..395 CDD:438225 35/50 (70%)
rnf220bXP_073766294.1 None

Return to query results.
Submit another query.