DRSC/TRiP Functional Genomics Resources

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Protein Alignment loco and RGS4

DIOPT Version :10

Sequence 1:NP_732773.1 Gene:loco / 42672 FlyBaseID:FBgn0020278 Length:1541 Species:Drosophila melanogaster
Sequence 2:NP_001095915.1 Gene:RGS4 / 5999 HGNCID:10000 Length:302 Species:Homo sapiens


Alignment Length:286 Identity:79/286 - (27%)
Similarity:121/286 - (42%) Gaps:56/286 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   702 LLEATNSEPDLGNRALPANASPF-RRAW-------GQSSFRTPRSDKV-----AKEQQQLGQSSP 753
            ||.|..:|.|.|......::... .|:|       |.:..|:..||.:     ||..|....||.
Human    18 LLRAGEAEGDRGAGTAERSSDWLDGRSWAIKETPTGLAGRRSEDSDNIFTGEEAKYAQSRSHSSS 82

  Fly   754 VRRT--------------------ASMNASDNDMYIKTLMLDSDLKSSRSQHQLSLLQVPKVLTT 798
            .|.:                    ||...|..||..:...|..  ||...:|..|..:..||   
Human    83 CRISFLLANSKLLNKMCKGLAGLPASCLRSAKDMKHRLGFLLQ--KSDSCEHNSSHNKKDKV--- 142

  Fly   799 PAPPSAITASVAAEGAAQDHGCPSSWAGSFERMLQDAAGMQTFSEFLKKEFSAENIYFWTACERY 863
                      |..:..:|:.  ...||.|.|.::....|:..|..|||.|:|.|||.||.:||.|
Human   143 ----------VICQRVSQEE--VKKWAESLENLISHECGLAAFKAFLKSEYSEENIDFWISCEEY 195

  Fly   864 RLLESEADRVAQAREIFAKHLANNSSDPVNVDSQARSLTEEKLADAAPDIFAPAQKQIFSLMKFD 928
            :.::|.:....:|::|:.:.::..::..||:||..|..|...:.:.....|..|||:||:||:.|
Human   196 KKIKSPSKLSPKAKKIYNEFISVQATKEVNLDSCTREETSRNMLEPTITCFDEAQKKIFNLMEKD 260

  Fly   929 SYQRFIRSDLY------KSCVEAEQK 948
            ||:||::|..|      .||...:||
Human   261 SYRRFLKSRFYLDLVNPSSCGAEKQK 286

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
locoNP_732773.1 PDZ_RGS12-like 70..145 CDD:467194
PTB_RGS12 251..391 CDD:269984
RGS_R12-like 828..941 CDD:188661 40/118 (34%)
RBD1_RGS12_like 1072..1141 CDD:340515
RBD2_RGS12_like 1142..1212 CDD:340587
GoLoco 1354..1375 CDD:214645
RGS4NP_001095915.1 RGS_RGS4 160..273 CDD:188669 40/112 (36%)
Blue background indicates that the domain is not in the aligned region.

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