DRSC/TRiP Functional Genomics Resources

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Protein Alignment loco and rgs4

DIOPT Version :10

Sequence 1:NP_732773.1 Gene:loco / 42672 FlyBaseID:FBgn0020278 Length:1541 Species:Drosophila melanogaster
Sequence 2:NP_001429061.1 Gene:rgs4 / 569876 ZFINID:ZDB-GENE-030131-9839 Length:334 Species:Danio rerio


Alignment Length:226 Identity:64/226 - (28%)
Similarity:104/226 - (46%) Gaps:54/226 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   778 LKSSRS-QHQLSLLQVPKVLTTPAPP--------------------SAITASVAAEGAAQDHGCP 821
            |||::. :|::..|     |..|.||                    :.:.....||        .
Zfish   132 LKSAKDIKHKIGFL-----LQKPDPPQEQKTLKEKEKEKDKEKVKDTVVNRITPAE--------T 183

  Fly   822 SSWAGSFERMLQDAAGMQTFSEFLKKEFSAENIYFWTACERYRLLESEADRV-AQAREIFAKHLA 885
            ..|..||..::::..|.:.|:.||:.|:|.|||.||.|||.::  ::.||:: .:||.||.:::.
Zfish   184 EKWKTSFTNLIKNDDGRKAFASFLQSEYSQENIEFWVACEDFK--QTPADKMNLKARNIFERYIE 246

  Fly   886 NNSSDPVNVDSQARSLTEEKLADAAPDIFAPAQKQIFSLMKFDSYQRFIRSDLYKSCVEAEQKNQ 950
            .:|...||:||..|..|.:.|.......|..||.:||:||:.|||:||:||.|:....:....|:
Zfish   247 ADSPREVNLDSVTREQTRKNLEMCDVSCFDEAQSKIFTLMEKDSYRRFLRSRLFLELSQPAMDNK 311

  Fly   951 PLPYSGLDLDELLKTNFHLGAFSKLKKSASN 981
            |   .||:              .|:|:..|:
Zfish   312 P---CGLE--------------KKVKRQISD 325

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
locoNP_732773.1 PDZ_RGS12-like 70..145 CDD:467194
PTB_RGS12 251..391 CDD:269984
RGS_R12-like 828..941 CDD:188661 44/113 (39%)
RBD1_RGS12_like 1072..1141 CDD:340515
RBD2_RGS12_like 1142..1212 CDD:340587
GoLoco 1354..1375 CDD:214645
rgs4NP_001429061.1 None
Blue background indicates that the domain is not in the aligned region.

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