DRSC/TRiP Functional Genomics Resources

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Protein Alignment loco and rgs1

DIOPT Version :10

Sequence 1:NP_732773.1 Gene:loco / 42672 FlyBaseID:FBgn0020278 Length:1541 Species:Drosophila melanogaster
Sequence 2:XP_021324130.2 Gene:rgs1 / 556179 ZFINID:ZDB-GENE-070705-145 Length:175 Species:Danio rerio


Alignment Length:154 Identity:56/154 - (36%)
Similarity:82/154 - (53%) Gaps:8/154 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   801 PPSAITASVAAEGAAQDHGCP------SSWAGSFERMLQDAAGMQTFSEFLKKEFSAENIYFWTA 859
            |||  .|...||..|...|..      .||..|.|::|...||...|.:|||.|:|.|||.||.|
Zfish    23 PPS--EAETHAEDTADRDGHKEPVDDVDSWGESIEKLLSCKAGQAAFQDFLKSEYSEENILFWLA 85

  Fly   860 CERYRLLESEADRVAQAREIFAKHLANNSSDPVNVDSQARSLTEEKLADAAPDIFAPAQKQIFSL 924
            ||.|:.:.:|.:.::.|.:|:.:.:...:...||:||..|:.....:::.....|..|||.||||
Zfish    86 CEEYKKVTNEPEMISMANQIYTEFVQTEAPRQVNIDSGTRTNITNSISEPTRSSFDTAQKMIFSL 150

  Fly   925 MKFDSYQRFIRSDLYKSCVEAEQK 948
            |..|.|.||::||:|:|.::...|
Zfish   151 MTRDCYPRFLKSDIYQSILQKHGK 174

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
locoNP_732773.1 PDZ_RGS12-like 70..145 CDD:467194
PTB_RGS12 251..391 CDD:269984
RGS_R12-like 828..941 CDD:188661 43/112 (38%)
RBD1_RGS12_like 1072..1141 CDD:340515
RBD2_RGS12_like 1142..1212 CDD:340587
GoLoco 1354..1375 CDD:214645
rgs1XP_021324130.2 None
Blue background indicates that the domain is not in the aligned region.

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