DRSC/TRiP Functional Genomics Resources

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Protein Alignment loco and rgs5b

DIOPT Version :10

Sequence 1:NP_732773.1 Gene:loco / 42672 FlyBaseID:FBgn0020278 Length:1541 Species:Drosophila melanogaster
Sequence 2:NP_001017821.1 Gene:rgs5b / 550519 ZFINID:ZDB-GENE-050417-359 Length:171 Species:Danio rerio


Alignment Length:117 Identity:38/117 - (32%)
Similarity:70/117 - (59%) Gaps:0/117 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   827 SFERMLQDAAGMQTFSEFLKKEFSAENIYFWTACERYRLLESEADRVAQAREIFAKHLANNSSDP 891
            ||..:|....|:..|:.||..|:|.|||.|:.|||.:|..:|.:...|:|::|:.:.:.:::...
Zfish    50 SFHELLLHKDGLCAFTTFLSSEYSEENIAFYLACEDFRNTKSSSKLCAKAKKIYEEFICSDAPRE 114

  Fly   892 VNVDSQARSLTEEKLADAAPDIFAPAQKQIFSLMKFDSYQRFIRSDLYKSCV 943
            ||:|.:.|::|.:.:.......|..||.:|::||:.|.|.||::|.:|:..:
Zfish   115 VNLDHETRTVTLKNMEQPTSSCFNFAQSKIYTLMEKDCYPRFLKSTVYQELI 166

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
locoNP_732773.1 PDZ_RGS12-like 70..145 CDD:467194
PTB_RGS12 251..391 CDD:269984
RGS_R12-like 828..941 CDD:188661 37/112 (33%)
RBD1_RGS12_like 1072..1141 CDD:340515
RBD2_RGS12_like 1142..1212 CDD:340587
GoLoco 1354..1375 CDD:214645
rgs5bNP_001017821.1 RGS 51..164 CDD:470619 37/112 (33%)
Blue background indicates that the domain is not in the aligned region.

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