DRSC/TRiP Functional Genomics Resources

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Protein Alignment loco and Rgs6

DIOPT Version :10

Sequence 1:NP_732773.1 Gene:loco / 42672 FlyBaseID:FBgn0020278 Length:1541 Species:Drosophila melanogaster
Sequence 2:XP_011242435.1 Gene:Rgs6 / 50779 MGIID:1354730 Length:552 Species:Mus musculus


Alignment Length:320 Identity:80/320 - (25%)
Similarity:133/320 - (41%) Gaps:83/320 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   751 SSPVRRTASMNASDNDMYIKTLMLDSDLKSSRSQHQLSLLQVPKVL-------------TTPAPP 802
            |.|:|:|     :.:|:..:...|::.:    .:|.|.:.:|.:.|             .|||.|
Mouse   250 SQPIRKT-----TKDDIRKQITFLNAQI----DRHCLKMSKVAESLIAYTEQYVEYDPFITPAEP 305

  Fly   803 S------AIT---ASVAAEGAAQDHGCPSSWAGSFERMLQDAAGMQTFSEFLKKEFSAENIYFWT 858
            |      .||   ..::.|.:.|.   ...|..||:.:|:|..|...|..||:.|||:||:.||.
Mouse   306 SNPWISDDITLWDIEMSKEPSQQR---VKRWGFSFDEILKDQVGRDQFLRFLESEFSSENLRFWL 367

  Fly   859 ACE--RYRLLESEADRVAQAREIFAKHLANNSSDPVNVDSQARSLTEEKLADAAPDIFAPAQKQI 921
            :.:  :.:.|:..|.||   .||:.:.||..:...:|:||.:..:|.:.:.|.....|..||:.|
Mouse   368 SVQDLKKQPLQDVAKRV---EEIWQEFLAPGAPSAINLDSHSYEITSQNVKDGGRYTFEDAQEHI 429

  Fly   922 FSLMKFDSYQRFIRSDLYKSCVEAEQKNQPLPYSGLDLDELLKT-----------NFH-----LG 970
            :.|||.|||.||:||:.|:..:.|::|.:........|::..::           .||     |.
Mouse   430 YKLMKSDSYARFLRSNAYQDLLLAKKKPESEQGRRTSLEKFTRSVCCWRRVRMAAAFHPRGGFLP 494

  Fly   971 AFSKLK-------------------KSASNAEDRRRKSLLPWHRKTRSKSRDRTEIMADM 1011
            |..|:.                   ......||..|:         ||.|.||..:..|:
Mouse   495 AVGKVAGGQAPYGPDAVLLTAPTPGPGPGPTEDPGRR---------RSTSNDRASLRGDL 545

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
locoNP_732773.1 PDZ_RGS12-like 70..145 CDD:467194
PTB_RGS12 251..391 CDD:269984
RGS_R12-like 828..941 CDD:188661 42/114 (37%)
RBD1_RGS12_like 1072..1141 CDD:340515
RBD2_RGS12_like 1142..1212 CDD:340587
GoLoco 1354..1375 CDD:214645
Rgs6XP_011242435.1 DEP_RGS7-like 31..119 CDD:239897
RGS_DHEX 116..217 CDD:375589
GGL 258..319 CDD:128520 13/64 (20%)
RGS_RGS6 328..452 CDD:188691 45/129 (35%)
Blue background indicates that the domain is not in the aligned region.

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