DRSC/TRiP Functional Genomics Resources

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Protein Alignment loco and Rgs1

DIOPT Version :10

Sequence 1:NP_732773.1 Gene:loco / 42672 FlyBaseID:FBgn0020278 Length:1541 Species:Drosophila melanogaster
Sequence 2:NP_056626.2 Gene:Rgs1 / 50778 MGIID:1354694 Length:209 Species:Mus musculus


Alignment Length:217 Identity:66/217 - (30%)
Similarity:105/217 - (48%) Gaps:37/217 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   738 SDKVAKEQQQ--LGQSSPVRRTASMNASDNDMYIKTLM--LDSDLKSSRSQHQLSLLQVPKVLTT 798
            |.|.:||...  |......:|..:. ..|...|:::::  |:|.:||::|:..||          
Mouse    22 SPKDSKEHSHSLLDDKKQKKRPKTF-GMDVKTYLRSMIPHLESGMKSAKSKDILS---------- 75

  Fly   799 PAPPSAITASVAAEGAAQDHGCPSSWAGSFERMLQDAAGMQTFSEFLKKEFSAENIYFWTACERY 863
                        ||...|       |:.|.|::|.:..|...|..|||.|||.|||.||.|||.|
Mouse    76 ------------AEEVMQ-------WSQSLEKLLANQTGQNVFGRFLKSEFSEENIEFWLACEDY 121

  Fly   864 RLLESEADRV-AQAREIFAKHLANNSSDPVNVDSQARSLTEEKLADAAPDIFAPAQKQIFSLMKF 927
            :  ::|.|.: .:|..|:...:.:::...:|:|...|..|.:|:....|..|..|||.|:|||:.
Mouse   122 K--KTETDLLHNKAENIYKAFVHSDAVKQINIDFHTRESTAKKIKTPTPTSFDEAQKVIYSLMEK 184

  Fly   928 DSYQRFIRSDLYKSCVEAEQKN 949
            |||.||::|::|.:.:...|.|
Mouse   185 DSYPRFLKSNIYLNLLNDLQAN 206

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
locoNP_732773.1 PDZ_RGS12-like 70..145 CDD:467194
PTB_RGS12 251..391 CDD:269984
RGS_R12-like 828..941 CDD:188661 44/113 (39%)
RBD1_RGS12_like 1072..1141 CDD:340515
RBD2_RGS12_like 1142..1212 CDD:340587
GoLoco 1354..1375 CDD:214645
Rgs1NP_056626.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 19..42 5/19 (26%)
RGS 86..199 CDD:470619 44/114 (39%)
Blue background indicates that the domain is not in the aligned region.

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