DRSC/TRiP Functional Genomics Resources

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Protein Alignment loco and rgs7a

DIOPT Version :10

Sequence 1:NP_732773.1 Gene:loco / 42672 FlyBaseID:FBgn0020278 Length:1541 Species:Drosophila melanogaster
Sequence 2:XP_021322816.2 Gene:rgs7a / 436814 ZFINID:ZDB-GENE-040718-276 Length:487 Species:Danio rerio


Alignment Length:504 Identity:110/504 - (21%)
Similarity:181/504 - (35%) Gaps:150/504 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   527 NRLTVRAMPDHSALLRSPPASSSLRRPNLLASFNLIQSPATNLTSTRSCDDVL-----NLFVDDS 586
            |.|..|.|.|..|.::.......:|         .::|..:.:.|..|..|::     ||.::|.
Zfish    20 NMLVYRKMEDVIARMQDEKNGIPIR---------TVKSFLSKIPSVFSGSDIVQWLLKNLCIEDQ 75

  Fly   587 PRTL------AAVASMDDISLHSAAPSLDEG--HTFAHPACVP-----------------RKMRR 626
            ...|      ||......||.| .....|:|  :.|..|...|                 |.|:.
Zfish    76 VEALHLGTLMAAHGYFFPISDH-VLTLKDDGTFYRFQTPYFWPSNCWEPENTDYAVYLCKRTMQN 139

  Fly   627 SLALETPTTPHKLSAQ-----------VFGQPGS-------RHSLGFEAIDS-------VQSSVS 666
            ...||......:..|:           :|.|..:       |..:..:.:||       |...|.
Zfish   140 KARLELADYEAESLARLQRAFARKWEFIFMQAEAQAKVDKKRDKIERKILDSQERAFWDVHRPVP 204

  Fly   667 GACMDQT-MDTWAS--LQNLHKSHKDRTSMSASSSSHCLLEATNSEPDLGNRALPANASPFRRAW 728
            | |::.| :|...|  ::|.||:.|....:.....||                            
Zfish   205 G-CVNTTEVDIKKSSRMKNPHKTRKSVYGLQNDIRSH---------------------------- 240

  Fly   729 GQSSFRTPRSDKVAKEQQQLGQSSPVRRTASMNASDNDMYIKTLMLDSDLKSSRSQHQLSLLQVP 793
              |...||..:.....:::|.:.                 ||......|      :|:|.:.:|.
Zfish   241 --SPTHTPAPEAKQPTEEELQEQ-----------------IKFWQAQLD------RHRLKMSKVA 280

  Fly   794 K--------------VLTTPAP-------PSAITASVAAEGAAQDHGCPSSWAGSFERMLQDAAG 837
            :              .|:||.|       .:.:....|::...|..  ...|....:.:|:|..|
Zfish   281 ESLLSYAEQYSDYDPFLSTPDPSNPWMSDDTTLWEMEASKEPGQTR--VRRWGFGIDEVLKDPVG 343

  Fly   838 MQTFSEFLKKEFSAENIYFWTACE--RYRLLESEADRVAQAREIFAKHLANNSSDPVNVDSQARS 900
            .:.|.:||:.|||:||:.||.|.:  :.|.:.....||   :||:.:.||..:...:||||::..
Zfish   344 REQFLKFLESEFSSENLRFWLAVQELKRRPIREVPTRV---QEIWEEFLAAGAPSAINVDSKSYD 405

  Fly   901 LTEEKLADAAPDIFAPAQKQIFSLMKFDSYQRFIRSDLYKSCVEAEQKN 949
            .|.:.:.|.....|..||:.|:.|||.|||.|||||..|:..::|::|:
Zfish   406 KTTQNVKDPGRYAFEDAQEHIYKLMKSDSYSRFIRSSAYQELLQAKKKS 454

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
locoNP_732773.1 PDZ_RGS12-like 70..145 CDD:467194
PTB_RGS12 251..391 CDD:269984
RGS_R12-like 828..941 CDD:188661 43/114 (38%)
RBD1_RGS12_like 1072..1141 CDD:340515
RBD2_RGS12_like 1142..1212 CDD:340587
GoLoco 1354..1375 CDD:214645
rgs7aXP_021322816.2 None
Blue background indicates that the domain is not in the aligned region.

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