DRSC/TRiP Functional Genomics Resources

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Protein Alignment loco and Rgs20

DIOPT Version :10

Sequence 1:NP_732773.1 Gene:loco / 42672 FlyBaseID:FBgn0020278 Length:1541 Species:Drosophila melanogaster
Sequence 2:NP_001388944.1 Gene:Rgs20 / 362477 RGDID:1586146 Length:380 Species:Rattus norvegicus


Alignment Length:361 Identity:85/361 - (23%)
Similarity:139/361 - (38%) Gaps:112/361 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   661 VQSSVSGACMDQTMDTWASLQNLHKSHKDRTSMSASSSSH-----CLLEATNSEPDLGNRALPAN 720
            |..:|:|..:..:.:....|::|          |:..|||     |||........|.....|:.
  Rat    48 VSQAVTGVKLPDSPNAPTLLRHL----------SSLLSSHRRLFLCLLRRPPPAARLRPWDFPSQ 102

  Fly   721 ASPFRRAW-------------------GQSSFRTPR---------SDKVAKEQQQLGQSSPVRRT 757
            .|.:..||                   |    |.||         |.::.:|....|:|||   .
  Rat   103 PSSWPTAWLSPVPRRLLFLLVASMALPG----RPPRGRRLKLSSPSQELREEDACTGKSSP---E 160

  Fly   758 ASMNASDNDMYIK----------------------------------------TLMLDSDLKSSR 782
            :.:.:...:|.::                                        |:....|.:..|
  Rat   161 SPVESEQTEMRMRQMCSGSETQGSVPSQQQGVGGRGSNACCFCWCCCCSCSCLTVRNQEDQRPQR 225

  Fly   783 SQHQLSLLQVPKVLTTPAPPSAITASVAAEGAAQDHGCPSSWAGSFERMLQDAAGMQTFSEFLKK 847
            :.|:|. ..:|....:|.|             ..:..|  :||.||:.::...||...|.|||:.
  Rat   226 AAHELR-TDIPACEESPMP-------------TLEEVC--AWAQSFDNLMVTPAGRNAFREFLRT 274

  Fly   848 EFSAENIYFWTACERYRLLESEADRVA---QAREIFAKHLANNSSDPVNVDSQARSLTEEKLADA 909
            |||.||:.||.|||.   |:.||::..   :||.|:..:::..|...|::||:.|.:....:.|.
  Rat   275 EFSEENMLFWMACEE---LKREANKSTIEEKARIIYEDYISILSPKEVSLDSRVREVINRNMVDP 336

  Fly   910 APDIFAPAQKQIFSLMKFDSYQRFIRSDLYKSCVEA 945
            :..||..||.||::||..|||.||:.|.:||..:::
  Rat   337 SQHIFDDAQLQIYTLMHRDSYPRFMNSTVYKDLLKS 372

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
locoNP_732773.1 PDZ_RGS12-like 70..145 CDD:467194
PTB_RGS12 251..391 CDD:269984
RGS_R12-like 828..941 CDD:188661 44/115 (38%)
RBD1_RGS12_like 1072..1141 CDD:340515
RBD2_RGS12_like 1142..1212 CDD:340587
GoLoco 1354..1375 CDD:214645
Rgs20NP_001388944.1 RGS 213..368 CDD:470619 56/173 (32%)
Blue background indicates that the domain is not in the aligned region.

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