DRSC/TRiP Functional Genomics Resources

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Protein Alignment loco and Rgs9

DIOPT Version :10

Sequence 1:NP_732773.1 Gene:loco / 42672 FlyBaseID:FBgn0020278 Length:1541 Species:Drosophila melanogaster
Sequence 2:NP_062097.1 Gene:Rgs9 / 29481 RGDID:3572 Length:677 Species:Rattus norvegicus


Alignment Length:374 Identity:85/374 - (22%)
Similarity:136/374 - (36%) Gaps:109/374 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   685 KSHKDRTSMSASSSSHCLLEATNSEPDLGNRALPANASPFRRAWGQSSFRTPRSDK------VAK 743
            ::..||.::.....::.|:.  .|.|.:.|..          .:|......|...|      |.|
  Rat   172 RNKADRYALDCQEKAYWLVH--RSPPGMNNVL----------DYGLDRVTNPNEVKKQTVTAVRK 224

  Fly   744 E---QQQLGQSSPVRRTASMNA--------SDNDMYIKTLMLDSDLKSSRSQH---QLSLLQVPK 794
            |   .||....|.|:.:.|:..        |.||..:...:..:...:..:|.   ...|::||.
  Rat   225 EIMYYQQALMRSTVKSSVSLGGIVKYSEQFSSNDAIMSGCLPSNPWITDDTQFWDLNAKLVEVPT 289

  Fly   795 VLTTPAPPSAITASVAAEGAAQDHGCPSSWAGSFERMLQDAAGMQTFSEFLKKEFSAENIYFWTA 859
            .:..                       ..||.:|..:::|..|.|:|..|||||||.||:.||.|
  Rat   290 KMRV-----------------------ERWAFNFSELIRDPKGRQSFQYFLKKEFSGENLGFWEA 331

  Fly   860 CERYRLLESEADRVAQ-AREIFAKHLANNSSDPVNVDSQARSLTEEKLADAAPDIFAPAQKQIFS 923
            ||  .|...:..:|.: |.||:...||..:...:|:|.:...:|.:.|......:...||..|:.
  Rat   332 CE--DLKYGDQSKVKEKAEEIYKLFLAPGARRWINIDGKTMDITVKGLRHPHRYVLDAAQTHIYM 394

  Fly   924 LMKFDSYQRFIRSDLYKSCVEAEQKNQPLPYSGLDLDELLKTNFHLGAFSKLKKSASNAEDRRRK 988
            |||.|||.|:::|.:||                                ..|.|:....|..:|.
  Rat   395 LMKKDSYARYLKSPIYK--------------------------------EMLAKAIEPQETTKRS 427

  Fly   989 SLLPWHRK-TRS-----------------KSRDRTEIMADMQHALMPAP 1019
            |.||:.|: .||                 ::.:..:|....|| |.|:|
  Rat   428 STLPFMRRHLRSSPSPVILRQLEEEERAREAANTVDITQPGQH-LAPSP 475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
locoNP_732773.1 PDZ_RGS12-like 70..145 CDD:467194
PTB_RGS12 251..391 CDD:269984
RGS_R12-like 828..941 CDD:188661 42/113 (37%)
RBD1_RGS12_like 1072..1141 CDD:340515
RBD2_RGS12_like 1142..1212 CDD:340587
GoLoco 1354..1375 CDD:214645
Rgs9NP_062097.1 DEP_RGS7-like 22..109 CDD:239897
RGS_DHEX 106..205 CDD:375589 6/44 (14%)
GGL 219..280 CDD:128520 12/60 (20%)
RGS_RGS9 292..412 CDD:188693 45/176 (26%)
PHA03379 <502..>568 CDD:223066
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 530..571
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 639..677
Blue background indicates that the domain is not in the aligned region.

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