DRSC/TRiP Functional Genomics Resources

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Protein Alignment loco and Rgs13

DIOPT Version :10

Sequence 1:NP_732773.1 Gene:loco / 42672 FlyBaseID:FBgn0020278 Length:1541 Species:Drosophila melanogaster
Sequence 2:NP_694811.1 Gene:Rgs13 / 246709 MGIID:2180585 Length:158 Species:Mus musculus


Alignment Length:124 Identity:39/124 - (31%)
Similarity:70/124 - (56%) Gaps:0/124 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   824 WAGSFERMLQDAAGMQTFSEFLKKEFSAENIYFWTACERYRLLESEADRVAQAREIFAKHLANNS 888
            ||.|.|.::....|...::.:||.|.|.|||.||.|||.|:.:.|...|:::|::::..::...|
Mouse    31 WAQSLESLMATKYGPIVYTAYLKLEHSDENIKFWMACETYKKIASRRGRISRAKKLYNIYIQPQS 95

  Fly   889 SDPVNVDSQARSLTEEKLADAAPDIFAPAQKQIFSLMKFDSYQRFIRSDLYKSCVEAEQ 947
            ...:|:||..|....:.:.:.....|..|||.::..|:.|||.||::|::|:..::..|
Mouse    96 PREINIDSTTREAIIKSIREPTQTCFEEAQKIVYMHMEMDSYPRFLKSEMYQQLLKTVQ 154

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
locoNP_732773.1 PDZ_RGS12-like 70..145 CDD:467194
PTB_RGS12 251..391 CDD:269984
RGS_R12-like 828..941 CDD:188661 35/112 (31%)
RBD1_RGS12_like 1072..1141 CDD:340515
RBD2_RGS12_like 1142..1212 CDD:340587
GoLoco 1354..1375 CDD:214645
Rgs13NP_694811.1 RGS 36..148 CDD:470619 35/111 (32%)
Blue background indicates that the domain is not in the aligned region.

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