DRSC/TRiP Functional Genomics Resources

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Protein Alignment loco and rgs-3

DIOPT Version :10

Sequence 1:NP_732773.1 Gene:loco / 42672 FlyBaseID:FBgn0020278 Length:1541 Species:Drosophila melanogaster
Sequence 2:NP_495223.1 Gene:rgs-3 / 174020 WormBaseID:WBGene00004346 Length:363 Species:Caenorhabditis elegans


Alignment Length:343 Identity:85/343 - (24%)
Similarity:128/343 - (37%) Gaps:104/343 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   682 NLHKS----HKDRTSMSASSSSHCLLEATNSEPDLGNRALPANASPFRRAWGQSSFRTPRSDKVA 742
            |||.|    |:.|.|.|||.:|.....|:|                      ..:.:.|.::..|
 Worm    22 NLHDSSESDHEGRQSRSASITSSTSAPASN----------------------DVTLQVPITNSSA 64

  Fly   743 KEQQQLGQSSPVRRTASMNASDNDMYIKTLMLDSDLKSSRSQHQLSLLQVPKVLTTPAPPSAITA 807
                    :||...|.|       ||....|.|...|.:|.|                ||...|.
 Worm    65 --------TSPTPSTGS-------MYFIAGMFDGKEKVNREQ----------------PPMPTTD 98

  Fly   808 SVAAEGAAQDHGCPSSW-AGSFERMLQDAAGMQTFSEFLKKEFSAENIYFWTACERYRLLESEAD 871
            .|....||       || ||:...:|.|..|.|.|..||.:..:.||:.|..|.|:.:.::...:
 Worm    99 GVEYPRAA-------SWAAGNCANVLNDDKGKQLFRVFLFQSLAEENLAFLEAMEKLKKMKISDE 156

  Fly   872 RVAQAREIFAKHLANNSSDPVNVDSQARSLTEEKLADAAPDI--FAPAQKQIFSLMKFDSYQRFI 934
            :||.|:||...:..:     :|:.|.:.......:|....|:  ||||.|::..|::.|.:.||.
 Worm   157 KVAYAKEILETYQGS-----INLSSSSMKSLRNAVASETLDMEEFAPAIKEVRRLLENDQFPRFR 216

  Fly   935 RSDLYKSCVEAEQKNQPLPYSGLDLDELLKTNF--------------HLGA--FSKLKKSASNAE 983
            ||:||            |.|    |:|||..::              |:|.  |....:|....|
 Worm   217 RSELY------------LEY----LEELLPRSYAEKWAQSFEGLLGNHVGRHHFRIFLRSIHAEE 265

  Fly   984 DRRRKSLLPWHRKTRSKS 1001
            :.|....:...|.:|.|:
 Worm   266 NLRFWEAVVEFRSSRHKA 283

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
locoNP_732773.1 PDZ_RGS12-like 70..145 CDD:467194
PTB_RGS12 251..391 CDD:269984
RGS_R12-like 828..941 CDD:188661 34/114 (30%)
RBD1_RGS12_like 1072..1141 CDD:340515
RBD2_RGS12_like 1142..1212 CDD:340587
GoLoco 1354..1375 CDD:214645
rgs-3NP_495223.1 RGS 112..218 CDD:214613 30/110 (27%)
RGS 240..358 CDD:459870 9/44 (20%)
Blue background indicates that the domain is not in the aligned region.

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