DRSC/TRiP Functional Genomics Resources

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Protein Alignment loco and rgs7b

DIOPT Version :10

Sequence 1:NP_732773.1 Gene:loco / 42672 FlyBaseID:FBgn0020278 Length:1541 Species:Drosophila melanogaster
Sequence 2:XP_073775053.1 Gene:rgs7b / 100535325 ZFINID:ZDB-GENE-130531-78 Length:464 Species:Danio rerio


Alignment Length:500 Identity:115/500 - (23%)
Similarity:191/500 - (38%) Gaps:119/500 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   520 GIVGIPD---NRLTVRAMPDHSALLRSPPASSSLRRPNLLASFNLIQSPATNLTSTRSCDDVL-- 579
            |..|:.|   |.|..|.|.|..|.::...:...:|         .::|..:.:.|..|..|::  
Zfish    10 GSNGVADESPNMLVYRKMEDIIARMQDEKSGIPIR---------TVKSFLSKIPSVFSGSDIVQW 65

  Fly   580 ---NLFVDDSPRTL------AAVASMDDISLHSAAPSLDEG--HTFAHPACVP------------ 621
               ||.::|....|      ||......||.| .....|:|  :.|..|...|            
Zfish    66 MQRNLSIEDQVEALHLGSLMAAHGYFFPISDH-VLTLKDDGTFYRFQTPYFWPSNCWEPENTDYA 129

  Fly   622 -----RKMRRSLALETPTTPHKLSAQ-----------VFGQPGS-------RHSLGFEAIDS--- 660
                 |.|:....||......:..|:           :|.|..:       |..:..:.:||   
Zfish   130 VYLCKRTMQNKARLELADYEAESLARLQRAFARKWEFIFMQAEAQAKVDKKRDKIERKILDSQER 194

  Fly   661 ----VQSSVSGACMDQTMDTWASLQNLHKSHKDRTSMSASSSSHCLLEATNSEPDLGNRALPANA 721
                |...|.| |::.|.........:.:.||.|.|:....:            |:.:.:....:
Zfish   195 AFWDVHRPVPG-CVNTTEADIKKSSRMKQPHKTRKSVYGLQN------------DIRSHSPTYTS 246

  Fly   722 SPFRRAWGQSSFRTPRSDKVAKEQQQLGQSSPVRRTASMNASDNDMYIKTLMLDSDLKSSRSQHQ 786
            :|        ..|.|..|:: :.|.|..|:...|....|:           .:...|.|...|: 
Zfish   247 AP--------EVREPTEDEL-RTQIQYWQAQLDRHRLKMS-----------KVAESLLSFSEQY- 290

  Fly   787 LSLLQVPKVLTTPAPPSA-ITASV------AAEGAAQDHGCPSSWAGSFERMLQDAAGMQTFSEF 844
               ::.....|||.|.:. |:..|      |::...|..  ...|...|:.:|:|..|.:.|.:|
Zfish   291 ---MEYDPFFTTPEPSNPWISDDVTSWELEASKEPGQQR--VKRWGFCFDEVLKDPVGREQFLKF 350

  Fly   845 LKKEFSAENIYFWTACE--RYRLLESEADRVAQAREIFAKHLANNSSDPVNVDSQARSLTEEKLA 907
            |:.|||:||:.||.:.:  :.|.:.....||   :||:.:.||..:...:||||::...|.:.:.
Zfish   351 LESEFSSENLRFWLSVQELKKRPIREVPTRV---QEIWEEFLAPGAPSAINVDSKSYDKTTQNVK 412

  Fly   908 DAAPDIFAPAQKQIFSLMKFDSYQRFIRSDLYKSCVEAEQKNQPL 952
            |.....|..||:.|:.|||.|||.|||||..|:..::|::|.:.|
Zfish   413 DPGRYAFEDAQEHIYKLMKSDSYSRFIRSSAYQEMLQAKKKVKAL 457

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
locoNP_732773.1 PDZ_RGS12-like 70..145 CDD:467194
PTB_RGS12 251..391 CDD:269984
RGS_R12-like 828..941 CDD:188661 43/114 (38%)
RBD1_RGS12_like 1072..1141 CDD:340515
RBD2_RGS12_like 1142..1212 CDD:340587
GoLoco 1354..1375 CDD:214645
rgs7bXP_073775053.1 None
Blue background indicates that the domain is not in the aligned region.

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